View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6469_low_10 (Length: 270)
Name: NF6469_low_10
Description: NF6469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6469_low_10 |
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| [»] scaffold0142 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 17365390 - 17365511
Alignment:
| Q |
137 |
tgaacaatgtactagccaaatacaaaatggctttaccattttattgggtaagattcccagcattacctagtgcagacttcaccttgtcttttgaacccaa |
236 |
Q |
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| T |
17365390 |
tgaacaacgcactagccagatacaaaatggctttagcattttactacgtaagattcccagcattacctagtgcagacttcactttgtctttcgaacccaa |
17365489 |
T |
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| Q |
237 |
ttacccttcttggttccatttt |
258 |
Q |
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| T |
17365490 |
ctaccctccttggttccatttt |
17365511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 17365109 - 17365219
Alignment:
| Q |
3 |
aatgcactaaaagcttttctttgtggtggaaaaaatactacttcaccaaccttgttgatgaaccaacatttcgcactaaactgattagtgcttttccttc |
102 |
Q |
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| T |
17365109 |
aatgcaccgaaagcttttctttgtggtggaataaatactacttcaacaaccttattgatgagccagtatttcggacaaaattgatcaatgcgtttccttc |
17365208 |
T |
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| Q |
103 |
tttgcagaaca |
113 |
Q |
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| T |
17365209 |
tttgcagaaca |
17365219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 23006803 - 23006937
Alignment:
| Q |
2 |
gaatgcactaaaagcttttctttgtggtggaaaaaatactacttcaccaaccttgttgatgaaccaacatttcgcactaaactgattagtgcttttcctt |
101 |
Q |
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| T |
23006803 |
gaatgcacagaaagtttctctttgtggaggaaaaaatactacctttccaaccttgtcgacgaaccagcatttcgtaccaacttgatcactgcttttcctt |
23006902 |
T |
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| Q |
102 |
ctttgcagaacatatcgaagaaaactaaaggtatg |
136 |
Q |
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| T |
23006903 |
ctttgcagagcaagtcgaaggaaaataaaggtatg |
23006937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 20839315 - 20839450
Alignment:
| Q |
2 |
gaatgcactaaaagcttttctttgtggtggaaaaaatactacttcaccaaccttgttgatgaaccaacatttcgcactaaactgattagtgcttttcctt |
101 |
Q |
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| T |
20839315 |
gaatgcaccaaaagcttttctttgtggtagaacaaatattacctttccaaccttgtcgacgaaacatcatttcatgcaaacctgatcagtgattttcctt |
20839414 |
T |
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| Q |
102 |
ctttgcagaacatatcgaagaaaactaaaggtatgt |
137 |
Q |
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| T |
20839415 |
ctttgcagagtaagacgaagaaaaataaaggtatgt |
20839450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 12426 - 12495
Alignment:
| Q |
189 |
attcccagcattacctagtgcagacttcaccttgtcttttgaacccaattacccttcttggttccatttt |
258 |
Q |
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| T |
12426 |
attcccagcattgcctagtgcagacttcactttgtctttcgaaccaagctatcctccttggtttcatttt |
12495 |
T |
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