View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6469_low_13 (Length: 242)

Name: NF6469_low_13

Description: NF6469

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6469_low_13

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 175; E-Value: 2e-94

Query Start/End: Original strand, 15 - 201

Target Start/End: Original strand, 8522090 - 8522276

Alignment:

Q	15	caaaggtaaaaaggtcatataaatttgaattatattttatacactaacatatacatgaacttggaattttattatataacacaacttgtggcatgcactt	114	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8522090	caaagttaaaaaggtcatataaatttgaattatattttatacactaacatatacatgaacttggaattttattatataacacaacttgtggcatgcactt	8522189	T

Q	115	ataaacagacctgagaccacatacttacaactgaaaatcaaactagcaagatcaaaagagtcaagcttgttttaacagaaagtaaaa	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8522190	ataaacagacctgagaccataaacttacaactgaaaatcaaactagcaagatcaaaagagtcaagcttgttttaacagaaagtaaaa	8522276	T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 42; E-Value: 0.000000000000006

Query Start/End: Original strand, 60 - 121

Target Start/End: Original strand, 42116793 - 42116854

Alignment:

Q	60	aacatatacatgaacttggaattttattatataacacaacttgtggcatgcacttataaaca	121	Q
		\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|
T	42116793	aacatatatataaacttggaattttattatataacacatcttgtggcatgcacatgtaaaca	42116854	T

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