View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6469_low_15 (Length: 234)
Name: NF6469_low_15
Description: NF6469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6469_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3602345 - 3602126
Alignment:
| Q |
1 |
cctttggggtgcgctgcggatgcaagctctcctgaaaacaataattatatatataaaaattgtattatgtcaaccaacatttttgcgtgtgaataacaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3602345 |
cctttggggtgcgctgcggatgcaagctctcctgaaaacaataattatatatataaaaattgtattatgtcaaccaacatttttgcgtgtgaataacaac |
3602246 |
T |
|
| Q |
101 |
ctattatttcattttcaaggcagtataacaa---aacttaaatcaaatacctgtaccctcaggggtattaaaaggagaaggtgcatcagagcttagaaga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3602245 |
ctattatttcattttcaaggcagtataacaaaacaacttaaatcaaatacctgtaccctcaggggtattaaaaggagaaggtgcatcagagcttagaaga |
3602146 |
T |
|
| Q |
198 |
taaggtttccttgcccaata |
217 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3602145 |
taaggtttccttgcccaata |
3602126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University