View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6469_low_6 (Length: 457)
Name: NF6469_low_6
Description: NF6469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6469_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 47121152 - 47121556
Alignment:
| Q |
18 |
caaacagaactaatttatttaactgagatttgtttatttattatttaggttggggagacagtgaaaaacaatgtaggggactatgtagtggaatgtgtga |
117 |
Q |
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| T |
47121152 |
caaacagaactaatttatttaactgagatttgtttatttattatttaggttggggagacagtgaaaaacaatgtaggggactatgtagtggaatgtgtga |
47121251 |
T |
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| Q |
118 |
acagtgttacacttgcagaagtgattcctgaaatatggggaagtagagtggatgattatgatcaaaagctatcgcgcacaaacagcgaattggatgcttt |
217 |
Q |
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| T |
47121252 |
atagtgttacacttgcagaagtgattcctgaaatatggggaagtagagtggatgattatgatcaaaagctatcgcgcacaaacagcgaattggatgcttt |
47121351 |
T |
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| Q |
218 |
gctaagcgcatatactgctgttggagcttgaaaactgaccttgttggatgtgtttgtacatacccaattacccaatcacactccaccaataagcacaaaa |
317 |
Q |
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| T |
47121352 |
gctaagcgcatatactgctgttggagcttgaaaactgaccttgttggatgtgtttgtacaaacccaactacccaataacactccaccaataagcacaaaa |
47121451 |
T |
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| Q |
318 |
agacaatgaacaaataatgtggggaatctcatgtgaatagtgttaacaacttaacaagtgtcccaagagaaataaataaataaataaattgtatggtaga |
417 |
Q |
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| T |
47121452 |
agacaatgaacaaataatgtggggaatctcatgtgaatagtgttaacaacttaacaagtgtctcaagagaaataaataaataaataaattgtatggtaga |
47121551 |
T |
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| Q |
418 |
tatta |
422 |
Q |
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| T |
47121552 |
tatta |
47121556 |
T |
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