View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6470_high_1 (Length: 518)
Name: NF6470_high_1
Description: NF6470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6470_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 8139042 - 8139513
Alignment:
| Q |
1 |
acagttctaaagtttctgtggctctcatctaattgttt-atgtatgcactatcagttaatacatggctgactttggaatgatgtctcagttttgtataaa |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8139042 |
acagttctaaagtttctgtggctctcatctaattgttttatgtatgcactatcagttaatacatggctgactttggaattatgtctcagttttgtataaa |
8139141 |
T |
|
| Q |
100 |
tgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcattt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139142 |
tgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcattt |
8139241 |
T |
|
| Q |
200 |
atttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgttgannnnnnnnnnnnnnnn |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8139242 |
atttaaaaatcttgatcatttatttctgcaatcatgatcatttctatgaatgatgaatctgtgtttttgaagcgcatctgttgatttttttt-------- |
8139333 |
T |
|
| Q |
300 |
attgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctcttgtatgagtcttgatcatttactaatgtttcttgtg |
399 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8139334 |
-tttagtctttgttactgaatgcatgcttgaatatcactgtttttggaatgatgtctctgctcttgtatgagtcttgatcatttagtaatgtt------- |
8139425 |
T |
|
| Q |
400 |
tgtaatttgacatcttctctcatgcctttcgaccgtactcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatgg |
499 |
Q |
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|
| T |
8139426 |
------------tcttctctcatgcctttcgaccgtactcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatgg |
8139513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 181 - 431
Target Start/End: Complemental strand, 7499701 - 7499460
Alignment:
| Q |
181 |
gtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgt |
280 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||| |
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| T |
7499701 |
gtaaaaatcttaatcatttatctaaaaatctttatcatttatttctgcaatcatgatcacttctatgaatgatgaatctgtgtttt-gaagctcatctgt |
7499603 |
T |
|
| Q |
281 |
tgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctcttgtatgagtcttgatca |
380 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
7499602 |
tgattttttttt--------ttgagtctttgttactgaatgcatgcttgaacatcactgtttttggaatgatgtttctgctcttttatgagtcttgatca |
7499511 |
T |
|
| Q |
381 |
tttactaatgtttcttgtgtgtaatttgacatcttctctcatgcctttcga |
431 |
Q |
| |
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| || |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7499510 |
tgtagtaatgtttcttgtgtgtaatttgacatcttctctcacgcctttcga |
7499460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 263
Target Start/End: Complemental strand, 7503107 - 7502967
Alignment:
| Q |
128 |
tgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatct---ttctcatttatttaaaaatcttgatcatttattt |
224 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| | | |||||||| ||||||| |||||||||||||| |
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| T |
7503107 |
tgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttatgtaaaaatattgatcatttattt |
7503008 |
T |
|
| Q |
225 |
ctgcaatc--atgatcatttccatgaatgatgaatctgtgt |
263 |
Q |
| |
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|||||||| ||||||| ||| ||||||||||||||||||| |
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| T |
7503007 |
ctgcaatcatatgatcacttctatgaatgatgaatctgtgt |
7502967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7499820 - 7499722
Alignment:
| Q |
1 |
acagttctaaagtttctgtggctctca-------tctaattgtttatgtatgcactatcagttaatacatggctgactttggaatgatgtctcagtttt |
92 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
7499820 |
acagttctaaagtttctgtggctctgaagtctgatctaattgtttatatatgcactatctgttaatacatggctggttttagaatgatgtctcagtttt |
7499722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 407
Target Start/End: Complemental strand, 7502928 - 7502831
Alignment:
| Q |
306 |
tctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctcttgtatgagtcttgatcatttactaatgtttcttgtgtgtaat |
405 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||| ||||||| | || | | ||||||||||||| | ||||||||||| | |||||| |
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| T |
7502928 |
tctttgttactgattgcatgcttggatatcactgtttttggaatgatgtctat----tttttttagtcttgatcattcagtaatgtttcttatctgtaat |
7502833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 499
Target Start/End: Complemental strand, 7499230 - 7499188
Alignment:
| Q |
457 |
tatgctcattgaacaggtaaccttcaaaatcaaaactttatgg |
499 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
7499230 |
tatgctaaatgaacaggtaaccttcaaaatcaaaactttatgg |
7499188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 497
Target Start/End: Complemental strand, 7502297 - 7502236
Alignment:
| Q |
436 |
actcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttat |
497 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||| |||||| ||||||||||| |||||||| |
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|
| T |
7502297 |
actcttttctggtgagggccctatgtgcattgaagaggtaaacttcaaaatcagaactttat |
7502236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 7503160 - 7503119
Alignment:
| Q |
221 |
atttctgcaatcatgatcatttccatgaatgatgaatctgtg |
262 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||||| |||| |
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| T |
7503160 |
atttctgcaatcatgatcacttctatgaatgatgaatttgtg |
7503119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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