View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6470_high_2 (Length: 494)
Name: NF6470_high_2
Description: NF6470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6470_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 477
Target Start/End: Original strand, 31652745 - 31653206
Alignment:
| Q |
16 |
aatatggtacttatatcaactaaaccaccaaaggagtatcctcaaactgattgtgctaacaatcatgtgttaaaaggaagtgaatcgtctgaagatgaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
31652745 |
aatatggtacttatatcaactaaaccaccaaaggagtttcctcaaactgattgtgctaacaatcatgtgtcaaacggaagtgaatcgtctgaagatgaaa |
31652844 |
T |
|
| Q |
116 |
catggggacaggaacaacaagattctatggctaaacagaaaaatgaggacatggtaaggaataggaaatcatatatccatcatttcacttttcagaaaag |
215 |
Q |
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| T |
31652845 |
catggggacaggaacaacaagattctatggctatacagaaaaatgaggacatggtaaggaataggaaatcatatatccatcatttcacttttcagaaaag |
31652944 |
T |
|
| Q |
216 |
aaaaagaaatctgaatcatctgttctatggcagaaagtaaatggtgaagagatggaagatattagtacaagttattacaaatcaaaccagcaaggtgcgc |
315 |
Q |
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| T |
31652945 |
aaaaagaaatctgaatcatctgttctatggcagaaagtaaatggtgaagagatggaagatattagtacaagttattacaaatcaaaccagcaaggtgcgc |
31653044 |
T |
|
| Q |
316 |
gcgaatacagacatttgattacaatccatggtggaaaatcagaaggtactatgaaggatagactaaaagttgatggcggtaaagttaaaaggctaagttt |
415 |
Q |
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| T |
31653045 |
gcgaatacagacatttgattacaatccatggtggaaaatcagaaggtactatgaaggatagactaaaagttgatggcggtaaagttaaaaggctaagttt |
31653144 |
T |
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| Q |
416 |
gagtgagaagaaactcaaatctgcttctgagtctcatggagccgagctaattaggtacctat |
477 |
Q |
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| T |
31653145 |
gagtgagaagaaactcaaatctgcttctgagtctcatggagccgagctaattaggtacctat |
31653206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 242 - 477
Target Start/End: Original strand, 31703301 - 31703536
Alignment:
| Q |
242 |
atggcagaaagtaaatggtgaagagatggaagatattagtacaagttattacaaatcaaaccagcaaggtgcgcgcgaatacagacatttgattacaatc |
341 |
Q |
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|||||||| ||||||| |||||| | ||||||||| | ||||| | || ||||||||||||||||| ||| | |||||| |||||||||| |||| |
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| T |
31703301 |
atggcagagtgtaaatgatgaagacaaggaagatataaatacaaatgctttcaaatcaaaccagcaagttgcacttcaatacaaacatttgattgcaatt |
31703400 |
T |
|
| Q |
342 |
catggtggaaaatcagaaggtactatgaaggatagactaaaagttgatggcggtaaagttaaaaggctaagtttgagtgagaagaaactcaaatctgctt |
441 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |||||| |
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| T |
31703401 |
catggtggaaaatcagaaggtaacatgaaggatatactaaaagttgatggtggtaaagtcagaaggctaagtttgagtgagaagaaactcaaaactgctt |
31703500 |
T |
|
| Q |
442 |
ctgagtctcatggagccgagctaattaggtacctat |
477 |
Q |
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|| | |||||||| | || |||||||||| ||||| |
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| T |
31703501 |
ctaaatctcatgggcctgacctaattaggtgcctat |
31703536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 31702922 - 31703027
Alignment:
| Q |
16 |
aatatggtacttatatcaactaaaccaccaaaggagtatcctcaaactgattgtgctaacaatcatgtgttaaaaggaagtgaatcgtctgaagatgaaa |
115 |
Q |
| |
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|||||||||||||||||||||||| ||||||| || ||| |||| ||||| ||| | |||||| |||||||| ||| ||||||| |||||||| ||| |
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| T |
31702922 |
aatatggtacttatatcaactaaatcaccaaaagaatataatcaatctgatagtgtcagcaatcaggtgttaaatggatgtgaatcatctgaagacgaat |
31703021 |
T |
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| Q |
116 |
catggg |
121 |
Q |
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|||||| |
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|
| T |
31703022 |
catggg |
31703027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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