View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6470_high_5 (Length: 262)
Name: NF6470_high_5
Description: NF6470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6470_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 9796162 - 9796010
Alignment:
| Q |
86 |
ctcctaggagtatgaccggcaacaacaagagtagagaccaaaaggagattaaggaagagaatgaaaatggacccaacaacaccctttgaacccattttgc |
185 |
Q |
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| T |
9796162 |
ctcctaggagtatgactggcaacaa---gagtagagaccaaaaggagattaaggaagataatgaaaatggaccc---aacaccctttgaacccattttgc |
9796069 |
T |
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| Q |
186 |
aaataatgctga-nnnnnnnnatccaataatgaattgcttgtggttgatgagtgaatct |
243 |
Q |
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| T |
9796068 |
aaataatgctgatttttttttttccaacaatgaattgcttgtggttgatgagtgaatct |
9796010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 9802151 - 9802046
Alignment:
| Q |
86 |
ctcctaggagtatgaccggcaacaacaagagtagagaccaaaaggagattaaggaagagaatgaaaatggacccaacaacaccctttgaacccattttgc |
185 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
9802151 |
ctcctaggagtatgactggcaacaa---gagtagagaccaaaaggagattaaggaagataatgaaaatggaccc---aacaccctttgaacccattttgc |
9802058 |
T |
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| Q |
186 |
aaataatgctga |
197 |
Q |
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|||||||||||| |
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| T |
9802057 |
aaataatgctga |
9802046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 9755724 - 9755644
Alignment:
| Q |
110 |
acaagagtagagaccaaaaggagattaaggaagagaatgaaaatggacccaacaacaccctttgaacccattttgcaaataatg |
193 |
Q |
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| T |
9755724 |
acaagagtagagacaaaaatgagatgaaggaagagaatgaaaatggatc---ctacaccctttaaacccattttgtaaataatg |
9755644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 9781263 - 9781210
Alignment:
| Q |
110 |
acaagagtagagaccaaaaggagattaaggaagagaatgaaaatggacccaaca |
163 |
Q |
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||||||||||| || |||| ||||||||||||||||||||||||||| |||||| |
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| T |
9781263 |
acaagagtagatacaaaaatgagattaaggaagagaatgaaaatggatccaaca |
9781210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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