View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6471_high_4 (Length: 423)
Name: NF6471_high_4
Description: NF6471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6471_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Complemental strand, 45515848 - 45515456
Alignment:
| Q |
15 |
gatatctgtagttgtggtttttactttttgatgtagaactgttaggttatacttccacaaggttaggatgttacatattgagaaatgacttgcatttttg |
114 |
Q |
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| T |
45515848 |
gatatctgtagttgtggtttttactttttgatgtagaactgttaggttatacttccacaaggttaggatgttacatattgagaaatgacttgcatttttg |
45515749 |
T |
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| Q |
115 |
tttacaaacttataaacatgctatttaatccttgtattttacattttaagcaaatttttaatcactggataatttgggtaactatttggttcttcaatta |
214 |
Q |
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| T |
45515748 |
tttacaaacttataaacatgctatttaatccttgtattttacattttaagcaaatttttaatcactggataatgtgggtaactatttggttcttcaatta |
45515649 |
T |
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| Q |
215 |
ttcaggcactcaacaccatggtgactcaagtgtacatttagctattgttaatataaaatttcttagannnnnnnnnnnnnnnngaaatgaaacacgtcta |
314 |
Q |
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| T |
45515648 |
ttcaggcactcaacaccatggtgactcaagtgtacatttagctattgttaatataaaatttcttagattttttgttttgttttgaaatgaaacacgtcta |
45515549 |
T |
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| Q |
315 |
tgactgagactgatagacaaaaaatgcaattatgtgaatgcaatagattaatgatggttagttacttaggcgtatagttttgttggccgatgt |
407 |
Q |
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| T |
45515548 |
tgactgagactgatagacaaaaaatgcaattatgtgaatgcaatagattaatgatggttagttacttaggcgtatagttttgttggccgatgt |
45515456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 25348553 - 25348359
Alignment:
| Q |
9 |
agcagagatatctgtagttgtggtttttactttttgatgtagaactgttaggttatacttccacaaggttaggatgttacatattgagaaatgacttgca |
108 |
Q |
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| T |
25348553 |
agcagtgatatctgtagttgtggtttttactttttgatgtagaactgttaggttatacttccacaaggttaggatgt-acatattgagaaatggtttgca |
25348455 |
T |
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| Q |
109 |
tttttgtttacaaacttataaacatgctatttaatccttgtattttacattttaagcaaatttttaatcactggataatttgggtaactatttggt |
204 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
25348454 |
tttttgtttacaaacttataaaaatgctatttaatccttgtattttacattttaagcaaatttttaatcactggataatgtggataactatttggt |
25348359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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