View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6471_high_9 (Length: 300)
Name: NF6471_high_9
Description: NF6471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6471_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 42028177 - 42028084
Alignment:
| Q |
201 |
gcagctagaacacgttcagtcacctcggcacacttgttgatgtcatgagatccatctacgaggatttcgggctcgactataggaactaagccat |
294 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||| |
|
|
| T |
42028177 |
gcagccagaacacgttcagtcacctcagcacacttgttgatgtcatgagatccatccactaggatttcgggctccactataggaactaggccat |
42028084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 29237169 - 29237370
Alignment:
| Q |
1 |
cctcctcctccctctttccaccagataagaacacaacagcaggaacggcagccggaacggttcgctgcaaagctttaacggtatactcagctataacttc |
100 |
Q |
| |
|
|||| ||||| |||| ||||||||| ||||| |||||||| || || ||||| || ||||||| |||||||||| ||||||| | |||||| | ||| || |
|
|
| T |
29237169 |
cctcttcctcactctgtccaccagacaagaaaacaacagctgggactgcagcaggtacggttctctgcaaagctctaacggtgtgctcagcaacaacctc |
29237268 |
T |
|
| Q |
101 |
gggggaaacctttggagaatctgaaccaggggtgaccatgttaggcttcaaaagggtgccttccagcagaacatgatgatcgtttaaagctttgtagcat |
200 |
Q |
| |
|
||| | ||||||||| | ||| || |||||||| ||||||||||||||||| || |||||||| || || ||||| || || || || || ||||||||| |
|
|
| T |
29237269 |
gggtgcaacctttggtgcatcagatccaggggtaaccatgttaggcttcaagagagtgccttcaaggaggacatggtggtcattcaaggccttgtagcat |
29237368 |
T |
|
| Q |
201 |
gc |
202 |
Q |
| |
|
|| |
|
|
| T |
29237369 |
gc |
29237370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 29233419 - 29233581
Alignment:
| Q |
1 |
cctcctcctccctctttccaccagataagaacacaacagcaggaacggcagccggaacggttcgctgcaaagctttaacggtatactcagctataacttc |
100 |
Q |
| |
|
|||| ||||| |||| | ||||||||||||| |||||||| || || ||||| || ||||||| |||||||||| ||||||| | |||||| | ||| || |
|
|
| T |
29233419 |
cctcttcctcactctgttcaccagataagaaaacaacagctgggactgcagcaggtacggttctctgcaaagctctaacggtgtgctcagcaacaacctc |
29233518 |
T |
|
| Q |
101 |
gggggaaacctttggagaatctgaaccaggggtgaccatgttaggcttcaaaagggtgccttc |
163 |
Q |
| |
|
||| | ||||||||| | ||| || |||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
29233519 |
gggtgcaacctttggtgcatcagatccaggggtaaccatgttaggcttcaagagagtgccttc |
29233581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 26629700 - 26629803
Alignment:
| Q |
114 |
ggagaatctgaaccaggggtgaccatgttaggcttcaaaagggtgccttccagcagaacatgatgatcgtttaaagctttgtagcatgcagctagaacac |
213 |
Q |
| |
|
||||||||||| || || || ||||| |||||||||||||| || ||||| || ||||||||||| || ||| ||| ||||| ||||| || ||||| | |
|
|
| T |
26629700 |
ggagaatctgatcctggtgtaaccatattaggcttcaaaagagtaccttcaagaagaacatgatggtcacttagagccttgtaacatgctgcaagaacgc |
26629799 |
T |
|
| Q |
214 |
gttc |
217 |
Q |
| |
|
|||| |
|
|
| T |
26629800 |
gttc |
26629803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University