View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6471_low_11 (Length: 271)

Name: NF6471_low_11
Description: NF6471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6471_low_11
NF6471_low_11
[»] chr4 (2 HSPs)
chr4 (17-260)||(9498833-9499076)
chr4 (186-233)||(56201173-56201220)
[»] chr7 (5 HSPs)
chr7 (118-259)||(18846185-18846325)
chr7 (118-259)||(15660280-15660420)
chr7 (70-227)||(47790300-47790458)
chr7 (182-249)||(36692251-36692318)
chr7 (70-168)||(15660179-15660278)
[»] chr1 (6 HSPs)
chr1 (118-258)||(34624211-34624350)
chr1 (122-258)||(20039505-20039641)
chr1 (122-258)||(29403633-29403769)
chr1 (98-168)||(29403830-29403900)
chr1 (100-168)||(20039431-20039499)
chr1 (225-256)||(11375456-11375487)
[»] chr8 (4 HSPs)
chr8 (118-259)||(20293201-20293343)
chr8 (118-259)||(21079832-21079974)
chr8 (122-259)||(13955753-13955888)
chr8 (128-249)||(2108287-2108409)
[»] chr6 (4 HSPs)
chr6 (127-248)||(29355339-29355460)
chr6 (120-259)||(19058850-19058986)
chr6 (198-258)||(7492158-7492218)
chr6 (98-168)||(19058990-19059060)
[»] chr2 (2 HSPs)
chr2 (146-258)||(23218993-23219105)
chr2 (199-253)||(44672766-44672821)
[»] chr3 (1 HSPs)
chr3 (122-194)||(28914400-28914472)
[»] scaffold0692 (1 HSPs)
scaffold0692 (186-233)||(5006-5053)
[»] chr5 (1 HSPs)
chr5 (225-253)||(43575459-43575487)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 9498833 - 9499076
Alignment:
Q  17 acatacataccgatataacctatacatgtgttttcccaaacaagcacagcttatagaagctgtgggaatacaaaagatagtatatttactggaatctagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9498833 acatacataccgatataacctatacatgtgttttcccaaacaagcacagcttatagaagctgtgggaatacaaaagatagtatatttactggaatctagg 9498932  T
Q  117 aagaatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagc 216  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9498933 aagaatttcagttatataagagagggaagcctagagggtgagacattaagaaagtttgttaagagttgtttaggagagaagttctctctggtctaggagc 9499032  T
Q  217 ttagctctggtaggagttctctgaactctggtttatcctttcat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9499033 ttagctctggtaggagttctctgaactctggtttatcctttcat 9499076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 56201173 - 56201220
Alignment:
Q  186 ttaggagagaagttctctctggtctaggagcttagctctggtaggagt 233  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  56201173 ttaggagagatgttctctctggtctaggagcctagctctggtaggagt 56201220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 118 - 259
Target Start/End: Complemental strand, 18846325 - 18846185
Alignment:
Q  118 agaatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 217  Q
    ||||||||||||||| ||||| ||| || ||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18846325 agaatttcagttataaaagaggggggagtctagagg-taaggcattcagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 18846227  T
Q  218 tagctctggtaggagttctctgaactctggtttatcctttca 259  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  18846226 tagctctggtaggagttctcagaactctggtttatcttttca 18846185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 15660280 - 15660420
Alignment:
Q  118 agaatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 217  Q
    |||||||| |||||| ||||| ||| || ||||||  | || |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  15660280 agaatttccgttataaaagaggggggagtctagaga-taaggcattcagaaagtttgttaagagttgtttaggagagaagttctttctggtctaggagct 15660378  T
Q  218 tagctctggtaggagttctctgaactctggtttatcctttca 259  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  15660379 tagctctggtaggagttctctgaactctggtttatcttttca 15660420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 47790458 - 47790300
Alignment:
Q  70 tagaagctgtgggaatacaaa-agatagtatatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 168  Q
    ||||||||||||||| ||||| |  ||| ||| ||| ||||||| ||||||||||||||||||  || || ||||| ||||||||||||  || | ||||    
T  47790458 tagaagctgtgggaacacaaacatttagaataattattggaatcaaggaagaatttcagttattaaacagagggaatcctagagggtgaagcagtcagaa 47790359  T
Q  169 agttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggt 227  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47790358 agtttcttaagagttgtttaggagagaagttctctctggtctaggagcttaactctggt 47790300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 36692251 - 36692318
Alignment:
Q  182 ttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtt 249  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||    
T  36692251 ttgtttaggagagaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggtt 36692318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 15660179 - 15660278
Alignment:
Q  70 tagaagctgtgggaatacaaa-agatagtatatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 168  Q
    ||||||||||||||||||||| || ||  ||| ||| |||||| |||| |||||| |||||||  ||||| |||||||||||||||| || |||||||||    
T  15660179 tagaagctgtgggaatacaaacagttataataattattggaatttaggcagaattgcagttattgaagagagggaagcctagagggtcagtcattaagaa 15660278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 118 - 258
Target Start/End: Complemental strand, 34624350 - 34624211
Alignment:
Q  118 agaatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagct 217  Q
    ||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||    
T  34624350 agaattttagttataaaagagagggaagcctagagggtgaggcattaagaaagtttgt-aagagttgtttaggagaaaagttgtctctggtctaggagct 34624252  T
Q  218 tagctctggtaggagttctctgaactctggtttatcctttc 258  Q
    |||||||||||||||||||||||||| ||||| ||| ||||    
T  34624251 tagctctggtaggagttctctgaactatggttaatcatttc 34624211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 258
Target Start/End: Original strand, 20039505 - 20039641
Alignment:
Q  122 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagc 221  Q
    ||||||||||| ||||| | ||||||||||||||||  |||  ||||| |||  |||||||||| ||||||||||||||| |||||||||||||||||||    
T  20039505 tttcagttataaaagagagagaagcctagagggtgatgcatacagaaaatttagtaagagttgtctaggagagaagttctttctggtctaggagcttagc 20039604  T
Q  222 tctggtaggagttctctgaactctggtttatcctttc 258  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  20039605 tctggtaggagttctctaaactctggtttatcatttc 20039641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 258
Target Start/End: Complemental strand, 29403769 - 29403633
Alignment:
Q  122 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagc 221  Q
    ||||||||||| ||||  |||||| |||||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||    
T  29403769 tttcagttataaaagatagggaagtctagagggtgattcattcagaaagtttattaagagttgtttaggagagaagttctctctggtcttggagcttggc 29403670  T
Q  222 tctggtaggagttctctgaactctggtttatcctttc 258  Q
    || ||||| |||||||||||| |||||||||| ||||    
T  29403669 tcgggtagaagttctctgaaccctggtttatcatttc 29403633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 29403900 - 29403830
Alignment:
Q  98 atatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 168  Q
    ||||||| ||||||||||||||| ||||||||||  ||||| ||||||||| |||||| || |||||||||    
T  29403900 atatttattggaatctaggaagagtttcagttattaaagagagggaagccttgagggttagtcattaagaa 29403830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 20039431 - 20039499
Alignment:
Q  100 atttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 168  Q
    ||||| ||||||||||||||| ||||||||||  |||||  ||||||||||||||| || |||||||||    
T  20039431 atttattggaatctaggaagagtttcagttattcaagagaaggaagcctagagggttagtcattaagaa 20039499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 256
Target Start/End: Complemental strand, 11375487 - 11375456
Alignment:
Q  225 ggtaggagttctctgaactctggtttatcctt 256  Q
    ||||||||||||||||||||||||||||||||    
T  11375487 ggtaggagttctctgaactctggtttatcctt 11375456  T

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Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 118 - 259
Target Start/End: Complemental strand, 20293343 - 20293201
Alignment:
Q  118 agaatttcagttatataagagtgggaagcc-tagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagc 216  Q
    ||||||||||||||| | ||| || ||||| ||||||| ||| |||| |||||||||  |||||||||||||||||||||||||||||| || |||||||    
T  20293343 agaatttcagttatagaggagaggaaagccctagagggggaggcattcagaaagtttgctaagagttgtttaggagagaagttctctcttgtataggagc 20293244  T
Q  217 ttagctctggtaggagttctctgaactctggtttatcctttca 259  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  20293243 ttagctctggtaggagttctctgaactctggtttatcctttca 20293201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 118 - 259
Target Start/End: Complemental strand, 21079974 - 21079832
Alignment:
Q  118 agaatttcagttatataagagtgggaagcc-tagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagc 216  Q
    ||||||||||||||| | ||| || ||||| ||||||| ||| |||| |||||||||  |||||||||||||||||||||||||||||| || |||||||    
T  21079974 agaatttcagttatagaggagaggaaagccctagagggggaggcattcagaaagtttgctaagagttgtttaggagagaagttctctcttgtataggagc 21079875  T
Q  217 ttagctctggtaggagttctctgaactctggtttatcctttca 259  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21079874 ttagctctggtaggagttctctgaactctggtttatcctttca 21079832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 13955888 - 13955753
Alignment:
Q  122 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagc 221  Q
    ||||||||||| ||||| ||| || ||||||| | || |||| ||||||||  | |||||||||||||||||||||||||||||||||||||||||||||    
T  13955888 tttcagttataaaagaggggggagtctagagg-taaggcattcagaaagttgct-aagagttgtttaggagagaagttctctctggtctaggagcttagc 13955791  T
Q  222 tctggtaggagttctctgaactctggtttatcctttca 259  Q
    |||||||||||||||||||||||||||| |||||||||    
T  13955790 tctggtaggagttctctgaactctggttaatcctttca 13955753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 2108409 - 2108287
Alignment:
Q  128 ttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctgg- 226  Q
    ||||| ||||| ||||||||||| | ||||| ||||  |||||| |||||||||||  ||||||||||| || |||||||||||||||| |||||||||     
T  2108409 ttatagaagagagggaagcctagtgagtgagtcattgggaaagtattttaagagtttgttaggagagaaattttctctggtctaggagcctagctctggt 2108310  T
Q  227 taggagttctctgaactctggtt 249  Q
    |||||||||   |||||||||||    
T  2108309 taggagttcatagaactctggtt 2108287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 127 - 248
Target Start/End: Complemental strand, 29355460 - 29355339
Alignment:
Q  127 gttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctgg 226  Q
    |||||| ||||| || |||||||||| || || |||| | ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29355460 gttataaaagagaggaaagcctagagagtaaggcattcataaagtttgttaagagttgtttaggagagaagttctatctggtctaggagcttagctctgg 29355361  T
Q  227 taggagttctctgaactctggt 248  Q
    |||||||||||||| |||||||    
T  29355360 taggagttctctgagctctggt 29355339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 19058986 - 19058850
Alignment:
Q  120 aatttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagctta 219  Q
    ||||||||||| | |||||  |||||||||||||||||  | ||||| |||||| ||||||||||||||||||| ||||   ||||||||||||||| ||    
T  19058986 aatttcagttaaaaaagagacggaagcctagagggtgaatcgttaaggaagtttgttaagagttgtttaggagataagt---ctctggtctaggagccta 19058890  T
Q  220 gctctggtaggagttctctgaactctggtttatcctttca 259  Q
    |||||||||||||||||||   ||||||||||||||||||    
T  19058889 gctctggtaggagttctcttccctctggtttatcctttca 19058850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 7492158 - 7492218
Alignment:
Q  198 ttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttc 258  Q
    |||||||||||||| ||||||||||||||||||  ||||||||| ||| ||||||| ||||    
T  7492158 ttctctctggtctacgagcttagctctggtaggtattctctgaattctagtttatcttttc 7492218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 19059060 - 19058990
Alignment:
Q  98 atatttactggaatctaggaagaatttcagttatataagagtgggaagcctagagggtgagacattaagaa 168  Q
    ||||| ||||||||||||||||||||||||||||  |||||  |||| |||||||||  || |||||||||    
T  19059060 atattcactggaatctaggaagaatttcagttattaaagagaaggaatcctagagggctagtcattaagaa 19058990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 23219105 - 23218993
Alignment:
Q  146 cctagagggtgagacattaagaaagttttttaagagttgtttaggagagaagttctctctggtctaggagcttagctctggtaggagttctctgaactct 245  Q
    |||||||  |||| |||| ||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23219105 cctagagaatgaggcattcagaaagtttgtcatgagttgtttaggagagaagttctctctgatctaggagcttagctctggtaggagttctctgaactct 23219006  T
Q  246 ggtttatcctttc 258  Q
    |||||||| ||||    
T  23219005 ggtttatcatttc 23218993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 44672821 - 44672766
Alignment:
Q  199 tctctctggtctaggagcttagctctgg-taggagttctctgaactctggtttatc 253  Q
    |||||||||||||||||| ||||||||| |||||||||   |||||||||||||||    
T  44672821 tctctctggtctaggagcatagctctggttaggagttcatagaactctggtttatc 44672766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 28914472 - 28914400
Alignment:
Q  122 tttcagttatataagagtgggaagcctagagggtgagacattaagaaagttttttaagagttgtttaggagag 194  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||| ||| |||||| ||||||| |||||    
T  28914472 tttcagttatataagagagggaagcctagagggtgattcattcagaaactttattaagaattgtttaagagag 28914400  T

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Target: scaffold0692 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 5053 - 5006
Alignment:
Q  186 ttaggagagaagttctctctggtctaggagcttagctctggtaggagt 233  Q
    |||| ||||| ||||||||| |||||||||| ||||||||||||||||    
T  5053 ttagcagagatgttctctctagtctaggagcctagctctggtaggagt 5006  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 43575459 - 43575487
Alignment:
Q  225 ggtaggagttctctgaactctggtttatc 253  Q
    |||||||||||||||||||||||||||||    
T  43575459 ggtaggagttctctgaactctggtttatc 43575487  T

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