View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6471_low_18 (Length: 227)
Name: NF6471_low_18
Description: NF6471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6471_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 43395896 - 43396105
Alignment:
| Q |
12 |
aacaataacaataacaatagccccagtaacacgccaccaccttctccagattctctccctccgcgtcagccacatcctcgaaaatcccgcttccaatctt |
111 |
Q |
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| T |
43395896 |
aacaataacaataacaatagcccaagtaacacgccaccaccttctccagattctctccctccgcgtcagccacatcctcgaaaatcccgcttccaatctt |
43395995 |
T |
|
| Q |
112 |
caccctctcctgcacctcagccgccgggaatccaagctcctaattataactccagaagaactttcaagccttctgcactgtctgaaccgttgccggagaa |
211 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43395996 |
caccctctcctgcacctcagccacagggaatccaagctcctaattataactccagaagaactttcaagccttctgcactgtctgaaccgttgccggagaa |
43396095 |
T |
|
| Q |
212 |
tacaagccgg |
221 |
Q |
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|||||||||| |
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| T |
43396096 |
tacaagccgg |
43396105 |
T |
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