View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6471_low_2 (Length: 476)

Name: NF6471_low_2
Description: NF6471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6471_low_2
NF6471_low_2
[»] chr6 (3 HSPs)
chr6 (260-455)||(12189024-12189219)
chr6 (13-67)||(12189462-12189516)
chr6 (136-186)||(12189294-12189344)
[»] chr3 (4 HSPs)
chr3 (316-455)||(2430557-2430690)
chr3 (260-318)||(2430911-2430969)
chr3 (261-319)||(2431035-2431093)
chr3 (265-319)||(2431171-2431225)
[»] chr8 (3 HSPs)
chr8 (260-318)||(16308771-16308829)
chr8 (409-455)||(16309007-16309053)
chr8 (261-319)||(16308645-16308703)
[»] chr7 (3 HSPs)
chr7 (260-318)||(19975706-19975764)
chr7 (405-455)||(19975938-19975988)
chr7 (261-319)||(19975581-19975639)
[»] chr5 (1 HSPs)
chr5 (405-455)||(14087377-14087427)
[»] chr1 (2 HSPs)
chr1 (260-318)||(22901725-22901783)
chr1 (405-455)||(22901955-22902005)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 260 - 455
Target Start/End: Complemental strand, 12189219 - 12189024
Alignment:
Q  260 tatctaacctttagatctgaagcatatgcagagcagagacgtgattcatgaaacaaaaacgacggcgatttacggttctacggtggtgttagctactgag 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12189219 tatctaacctttagatctgaagcatatgcagagcagagacgtgattcatgaaacaaaaacgacggcgatttacggttctacagtggtgttagctactgag 12189120  T
Q  360 agtgagagagagtttcaggatctgcctccannnnnnngcgtggattgacagagaatggcgtaaaacaaagggaatcaagttggaaagtggtgattc 455  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12189119 agtgagagagagtttcaggatctgcctccatttttctgcgtggattgacagagaacggcgtaaaacaaagggaatcaagttggaaagtggtgattc 12189024  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 12189516 - 12189462
Alignment:
Q  13 aatattcagtgatatggaagtttcccaagccagtctgagaaaatgagattgaaac 67  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  12189516 aatattcagtgatatggaagtttcctaagccggtctgagaaaatgagattgaaac 12189462  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 12189344 - 12189294
Alignment:
Q  136 ccaaccttcagatttgaagcatacacggagcatggatgtgaatcatgaaac 186  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  12189344 ccaaccttcagatttgaagcatacgcggagcatggatgtgaatcatcaaac 12189294  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 316 - 455
Target Start/End: Complemental strand, 2430690 - 2430557
Alignment:
Q  316 aaacgacggcgatttacggttctacggtggtgttagctactgagagtgagagagagtttcaggatctgcctccannnnnnngcgtggattgacagagaat 415  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||      ||||||||||||| ||||||||       ||||| ||||||||||||     
T  2430690 aaacgacggcgatttacggctctacggtggtgttagtgactgagag------agagtttcaggatttgcctccatttttctgcgtgtattgacagagaaa 2430597  T
Q  416 ggcgtaaaacaaagggaatcaagttggaaagtggtgattc 455  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2430596 ggcgtaaaacaaagggaatcaagttggaaagtggtgattc 2430557  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 2430969 - 2430911
Alignment:
Q  260 tatctaacctttagatctgaagcatatgcagagcagagacgtgattcatgaaacaaaaa 318  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2430969 tatctaacctttagatctgaagcatatgcagatcagagacgtgattcatgaaacaaaaa 2430911  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 2431093 - 2431035
Alignment:
Q  261 atctaacctttagatctgaagcatatgcagagcagagacgtgattcatgaaacaaaaac 319  Q
    |||| ||||||| || ||||||||||||||||||  || |||| |||||||||||||||    
T  2431093 atcttacctttaaatttgaagcatatgcagagcatggatgtgaatcatgaaacaaaaac 2431035  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 2431225 - 2431171
Alignment:
Q  265 aacctttagatctgaagcatatgcagagcagagacgtgattcatgaaacaaaaac 319  Q
    ||||||||||| ||||||||| ||||| |||||| |||| |||||||| ||||||    
T  2431225 aacctttagatttgaagcatacgcagaacagagatgtgaatcatgaaataaaaac 2431171  T

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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 16308771 - 16308829
Alignment:
Q  260 tatctaacctttagatctgaagcatatgcagagcagagacgtgattcatgaaacaaaaa 318  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  16308771 tatctaacctttgaatctgaagcatatgcagagcagagacgtgattcatgaaacaaaaa 16308829  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 16309007 - 16309053
Alignment:
Q  409 agagaatggcgtaaaacaaagggaatcaagttggaaagtggtgattc 455  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  16309007 agagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattc 16309053  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 16308645 - 16308703
Alignment:
Q  261 atctaacctttagatctgaagcatatgcagagcagagacgtgattcatgaaacaaaaac 319  Q
    |||| ||||||| || ||||||||||||||||||  || |||| |||||||||||||||    
T  16308645 atcttacctttaaatttgaagcatatgcagagcatggatgtgaatcatgaaacaaaaac 16308703  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 19975706 - 19975764
Alignment:
Q  260 tatctaacctttagatctgaagcatatgcagagcagagacgtgattcatgaaacaaaaa 318  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||    
T  19975706 tatctaacctttgaatctgaagcatatgtagagcagagacgtgattcatgaaacaaaaa 19975764  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 455
Target Start/End: Original strand, 19975938 - 19975988
Alignment:
Q  405 tgacagagaatggcgtaaaacaaagggaatcaagttggaaagtggtgattc 455  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||||||    
T  19975938 tgacagcgaaaggcgtaaaacaaagtgaatcaagttggaaagtggtgattc 19975988  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 19975581 - 19975639
Alignment:
Q  261 atctaacctttagatctgaagcatatgcagagcagagacgtgattcatgaaacaaaaac 319  Q
    |||| ||||||| || ||||||||||||||||||  || |||| |||||||||||||||    
T  19975581 atcttacctttaaatttgaagcatatgcagagcatggatgtgaatcatgaaacaaaaac 19975639  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 455
Target Start/End: Original strand, 14087377 - 14087427
Alignment:
Q  405 tgacagagaatggcgtaaaacaaagggaatcaagttggaaagtggtgattc 455  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14087377 tgacagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattc 14087427  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 22901725 - 22901783
Alignment:
Q  260 tatctaacctttagatctgaagcatatgcagagcagagacgtgattcatgaaacaaaaa 318  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  22901725 tatctaacctttgaatctgaagcatatgcagagcaaagacgtgattcatgaaacaaaaa 22901783  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 455
Target Start/End: Original strand, 22901955 - 22902005
Alignment:
Q  405 tgacagagaatggcgtaaaacaaagggaatcaagttggaaagtggtgattc 455  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22901955 tgacagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattc 22902005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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