View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6471_low_5 (Length: 413)
Name: NF6471_low_5
Description: NF6471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6471_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 45445005 - 45444617
Alignment:
| Q |
1 |
caatgctccttcttcaaacggtgacgccaattccgagaattccggccaacacgctgacggcgctgctcccagtggtggtgctggtgctggtggcgctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
45445005 |
caatgctccttcttcaaacggtgacgccaattccgagaattccggccaacacgctgacggcgctgctcccagtggtggtgctggtg------gagctctt |
45444912 |
T |
|
| Q |
101 |
gatgaagctcgtctgaggtataaagatgctgttgctggacttcggagtgttcttgccgctattcccaattctcagaaggtccaatttcgaatccctagtt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45444911 |
gatgaagctcgtttgaggtataaagatgctgttgctggacttcggagtgttcttgccgctattcccaattctcagaaggtgcaatttcgaatccctagtt |
45444812 |
T |
|
| Q |
201 |
ttctaattcgggttttattgtgtgttctttttgttactagatctagattttttgaatcattgaactttaggttagtggaaaatcaatgaattggcaagtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45444811 |
ttctaattcgggttttattgtgtgttctttttgttactagatctagattttttgaatcattgaactttaggttagtggaaaatcaatgaattggcaagtc |
45444712 |
T |
|
| Q |
301 |
caaaacttaatttttaaactcttttctgcagcaataagagttgccaagttcattgtaaagattgtattcctaatcttattttttcttgagtaact |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45444711 |
caaaacttaatttttaaactcttttctgcagcaataagagttgccaagttcattgtaaagattgtattcctaatcttattttttcttaagtaact |
45444617 |
T |
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