View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6471_low_7 (Length: 373)
Name: NF6471_low_7
Description: NF6471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6471_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Complemental strand, 29955380 - 29955018
Alignment:
| Q |
11 |
cacagaaggtgtgaatgagaaggcactaagaccaaatggattaccaaaatcattaattcgctatgacggtaatacaaacaattgagccattttttgagat |
110 |
Q |
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| T |
29955380 |
cacagaaggtgtgaatgagaaggcactaagaccaaatggattaccaaaatcattaattcgctatgacggtaatacaaacaattgagccattttttgagat |
29955281 |
T |
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| Q |
111 |
attgtgtgatgatggttccaacttcacatgtaatcgtgtaatttctcatttgctagctcgtcaaaaggaggaagctatgggttcaatcacagaggttgtt |
210 |
Q |
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| T |
29955280 |
attgtgtgatgatgattccaacttcacatgtaatcgtgtaatttctcatttgctagctcgtcaaaaggaggaagctatgggttcaatcacagaggttgtt |
29955181 |
T |
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| Q |
211 |
caaaccgttaagaatccaaaatcgattattcgcagtaagaacgatgacactgcaaccgtcatgcatgaagagccagagaatctcaatcatgattttgttt |
310 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29955180 |
caaaccgttaggaatccaaaatcgattattcgcagtaagaacgatgacactgcaaccatcatgcatgaagagccggagaatctcaatcatgattttgttt |
29955081 |
T |
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| Q |
311 |
tgccaaagtccgttgaacctgtgaacgacactacaacaactggtagacaaactccactgaaat |
373 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29955080 |
tgccaaagtctgttgaacctgtgaacgacactacaacacctggtagacaaactccactgaaat |
29955018 |
T |
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