View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6471_low_8 (Length: 332)
Name: NF6471_low_8
Description: NF6471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6471_low_8 |
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| [»] scaffold0314 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 32971306 - 32971620
Alignment:
| Q |
1 |
atgttgtatcggattctctctctgatccaccggtacattttatatttcttatgattcttgttatgttctgaaattttgattgatttgatttcgtagtgaa |
100 |
Q |
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| T |
32971306 |
atgttgtatcggattctctctctgatccaccggtacatgttatatttcttatgattcttgttatgttctgaaattttgattgatttgattttgtagtgaa |
32971405 |
T |
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| Q |
101 |
aaatgaattggatctgagtttgatcaggatttttgttgtttgagttgtgatgcaattgaattgaatgcttgtttctgtttgttacaatgtgaggaatctg |
200 |
Q |
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| T |
32971406 |
aaatgaattggatctgagtttgattaggatttttgttgtttgagttgtgattcaattgaattgaatgcttgtttctgtttgttacaatgtgaggaatctg |
32971505 |
T |
|
| Q |
201 |
tagcgctagaatgcatgtctgatgtccgatatagtgttctcgacacttgtgattacgttcaattatgtcatttcgtcaaattgtgtgtctggatcatgtt |
300 |
Q |
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| T |
32971506 |
tagccctagaatgcgtgtctgatgtccgatatagtgttctcgacacttgtgattatgttcaattatgtcatttcgtcaaat--tgtgtctggatcatgtt |
32971603 |
T |
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| Q |
301 |
tggtgtccgtatctgtg |
317 |
Q |
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| T |
32971604 |
tggtgtccgtatctgtg |
32971620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0314 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0314
Description:
Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 9001 - 8969
Alignment:
| Q |
241 |
cgacacttgtgattacgttcaattatgtcattt |
273 |
Q |
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| T |
9001 |
cgacacttgtgattacgttgaattatgtcattt |
8969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 1586660 - 1586620
Alignment:
| Q |
242 |
gacacttgtgattacgttcaattatgtcatttcgtcaaatt |
282 |
Q |
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| T |
1586660 |
gacacatgtgattacgttcaattatgtcattttttcaaatt |
1586620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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