View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6472_low_1 (Length: 248)
Name: NF6472_low_1
Description: NF6472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6472_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 7818662 - 7818423
Alignment:
| Q |
2 |
aatgtacaatcatgggtcttttcttggagggttgcttggactgagatagatttcatttcaagtgttaaaaggcatgaataattcacacgtacagtaagag |
101 |
Q |
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| T |
7818662 |
aatgtacaatcatgggtcttttcttggagggttgcttggactgagatagatttcatttcaagtactaaaag-catgaataattcacacgtacagtaagag |
7818564 |
T |
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| Q |
102 |
caaagaagaagcaaaaacatcatacataaaagagaaatgataataaagttctttctcagtga----ttcttgtgaacggattggagagaattgtattggg |
197 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
7818563 |
caaagaagaagcacaaacatcatacataaaagagaaacgataataaagttctttctcactgattctttcttgtgaacggattggagagaattgtattggg |
7818464 |
T |
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| Q |
198 |
aaaaacc-----caaatataggtctttttgtacaaagaatt |
233 |
Q |
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||||||| | ||||||||||||||||||||||||||| |
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| T |
7818463 |
aaaaacctaagtctaatataggtctttttgtacaaagaatt |
7818423 |
T |
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