View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_high_17 (Length: 342)
Name: NF6473_high_17
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 12000591 - 12000910
Alignment:
| Q |
16 |
ttaactttgatcttcttggtgctaatttatatgactcactccatacaaaactcgctttggttttaaatagacccccgctagttgattgtaggattgatcc |
115 |
Q |
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| T |
12000591 |
ttaactttgatcttcttggtgctaatttatatgactcacttcatataaagctcgttttgattttaaatagacctccgctagttgattgtaggattgatcc |
12000690 |
T |
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| Q |
116 |
ctcggattagtatgttcttcgattagataccttcttnnnnnnn-tagattgaacttatattctctcattcccatctaaaaaattgtggtcat--tttcct |
212 |
Q |
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|||| |||||| || |||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
12000691 |
ctcgaattagtctgctcttcgattagataccgtgttaaaaaaaatagattgaacttatattctctcattcccatctagaaaattgtggtcatattttcct |
12000790 |
T |
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| Q |
213 |
tctcttgcactcatctttctattcaaccaactccccttgcctcactaaccttcttgttttcatataagnnnnnnnnnntgtcaacatccacacaaattcc |
312 |
Q |
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| T |
12000791 |
tctcttgcactcatctttctattcaaccaactccccttgcctcactaaccttcttgttttcatataagaaaaaaaaaatgtcaacatccacac-aattcc |
12000889 |
T |
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| Q |
313 |
cagattgttaccatcctatgc |
333 |
Q |
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||||||||||||||||||||| |
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| T |
12000890 |
cagattgttaccatcctatgc |
12000910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 17646924 - 17646964
Alignment:
| Q |
206 |
ttttccttctcttgcactcatctttctattcaaccaactcc |
246 |
Q |
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| T |
17646924 |
ttttccttctcttctactcatctttccattcaaccaactcc |
17646964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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