View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6473_high_20 (Length: 322)

Name: NF6473_high_20
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6473_high_20
NF6473_high_20
[»] chr2 (15 HSPs)
chr2 (45-311)||(31229486-31229752)
chr2 (10-258)||(31187966-31188214)
chr2 (10-253)||(31176671-31176914)
chr2 (23-253)||(31196035-31196265)
chr2 (23-253)||(31214647-31214877)
chr2 (88-249)||(31250917-31251078)
chr2 (149-249)||(31242050-31242150)
chr2 (136-249)||(31302470-31302583)
chr2 (88-249)||(31353173-31353334)
chr2 (149-258)||(31278544-31278653)
chr2 (149-249)||(31371320-31371420)
chr2 (149-249)||(31381832-31381932)
chr2 (133-247)||(31288127-31288241)
chr2 (155-246)||(31313226-31313317)
chr2 (217-249)||(2712003-2712035)
[»] chr5 (2 HSPs)
chr5 (158-249)||(36209851-36209942)
chr5 (217-246)||(482855-482884)
[»] chr8 (5 HSPs)
chr8 (155-247)||(21002284-21002376)
chr8 (149-247)||(19874975-19875073)
chr8 (173-233)||(10401455-10401515)
chr8 (170-246)||(20062615-20062691)
chr8 (155-247)||(21008991-21009083)
[»] chr3 (2 HSPs)
chr3 (210-250)||(5804115-5804155)
chr3 (210-250)||(5855840-5855880)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 45 - 311
Target Start/End: Original strand, 31229486 - 31229752
Alignment:
Q  45 gaagactcaaattggatagaaggtatgaagttatggatgtgttagttacccaatcaacaagagagaagcattcatcccttggcctattcatggtgttgtg 144  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31229486 gaagactcaaattggatataaggtatgaagttatggatgtgttagttacccaatcaacaagagagaagcattcatcccttggcctattcatggtgttgtg 31229585  T
Q  145 cttcccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatcca 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31229586 cttcccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatcca 31229685  T
Q  245 ctgcaacattgaaaattcatatccttgaaattcataataagcggtgtaaattaatttgactagtatt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31229686 ctgcaacattgaaaattcatatccttgaaattcataataagcggtgtaaattaatttgactagtatt 31229752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 31187966 - 31188214
Alignment:
Q  10 agatgaaatacaaacaaacttcaagatattgtgatgaagactcaaattggatagaaggtatgaagttatggatgtgttagttacccaatcaacaagagag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31187966 agatgaaatacaaacaaacttcaagatattgtgatgaagactcaaattggatagaaggtatgaagttatgggtgtgttagttacccaatcaacaagagag 31188065  T
Q  110 aagcattcatcccttggcctattcatggtgttgtgcttcccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaat 209  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  31188066 aagcattcatcccttggcttattcatggtgttgtgcttcccactaacaatttccaaggcaacgactccaaaactataaacatccactttctccgtcaaat 31188165  T
Q  210 atccgtgcattgcatattctggagccatatatccactgcaacattgaaa 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31188166 atccgtgcattgcatattctggagccatatatccactgcaacatcgaaa 31188214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 31176671 - 31176914
Alignment:
Q  10 agatgaaatacaaacaaacttcaagatattgtgatgaagactcaaattggatagaaggtatgaagttatggatgtgttagttacccaatcaacaagagag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31176671 agatgaaatacaaacaaacttcaagatattgtgatgaagactcaaattggatagaaggtataaagttatggatgtgttagttacccaatcaacaagagag 31176770  T
Q  110 aagcattcatcccttggcctattcatggtgttgtgcttcccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaat 209  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  31176771 aagcattcatcccttggcttattcatggtgttatgcttcccactaacaatttccaaggcaacgactccaaaactataaacatccactttctccgtcaaat 31176870  T
Q  210 atccgtgcattgcatattctggagccatatatccactgcaacat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31176871 atccgtgcattgcatattctggagccatatatccactgcaacat 31176914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 31196035 - 31196265
Alignment:
Q  23 acaaacttcaagatattgtgatgaagactcaaattggatagaaggtatgaagttatggatgtgttagttacccaatcaacaagagagaagcattcatccc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31196035 acaaacttcaagatattgtgatgaagactcaaattggatagaaggtatgaagttatggatgtgttagttacccgatcaacaagagagaagcattcatccc 31196134  T
Q  123 ttggcctattcatggtgttgtgcttcccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31196135 ttggcctattcatggtgttgtgcttcccactaacaatttccaaggcaactactccaaaactataaacatccactttctccgtcaaatatccgtgcattgc 31196234  T
Q  223 atattctggagccatatatccactgcaacat 253  Q
    |||||||||||||||||||||||||||||||    
T  31196235 atattctggagccatatatccactgcaacat 31196265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 31214647 - 31214877
Alignment:
Q  23 acaaacttcaagatattgtgatgaagactcaaattggatagaaggtatgaagttatggatgtgttagttacccaatcaacaagagagaagcattcatccc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31214647 acaaacttcaagatattgtgatgaagactcaaattggatagaaggtatgaagttatggatgtgttagttacccgatcaacaagagagaagcattcatccc 31214746  T
Q  123 ttggcctattcatggtgttgtgcttcccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31214747 ttggcctattcatggtgttgtgcttcccactaacaatttccaaggcaactactccaaaactataaacatccactttctccgtcaaatatccgtgcattgc 31214846  T
Q  223 atattctggagccatatatccactgcaacat 253  Q
    |||||||||||||||||||||||||||||||    
T  31214847 atattctggagccatatatccactgcaacat 31214877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 31250917 - 31251078
Alignment:
Q  88 agttacccaatcaacaagagagaagcattcatcccttggcctattcatggtgttgtgcttcccactaacaatttccaaggcaacaactccaaaactataa 187  Q
    |||||||||||||| |||| ||||   ||| ||| ||| || || ||||||||||  ||| |||||||| |||||||| ||||||| |||||||||||||    
T  31250917 agttacccaatcaagaagatagaatgcttcctcctttgaccgatacatggtgttgctctttccactaacgatttccaaagcaacaattccaaaactataa 31251016  T
Q  188 acatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccactgca 249  Q
    ||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  31251017 acatctgctttatccgtcaaataaccatgcattgcatattcaggagccatatatccactgca 31251078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 31242050 - 31242150
Alignment:
Q  149 ccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccactgc 248  Q
    |||||||| |||||||||||||||| |||||||||||||||||| ||||| || |||||||| || |||||||||||||| |||||||||||||||||||    
T  31242050 ccactaacgatttccaaggcaacaattccaaaactataaacatcagctttgtctgtcaaataaccatgcattgcatattcaggagccatatatccactgc 31242149  T
Q  249 a 249  Q
    |    
T  31242150 a 31242150  T

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Target: chr2; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 31302470 - 31302583
Alignment:
Q  136 ggtgttgtgcttcccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagcc 235  Q
    |||||||  ||| |||||||| ||||| |||||||||| |||||||||||||||||| ||||| ||||||||||| || |||||||| ||||| ||||||    
T  31302470 ggtgttgctctttccactaacgatttctaaggcaacaattccaaaactataaacatctgctttgtccgtcaaataaccatgcattgcgtattcaggagcc 31302569  T
Q  236 atatatccactgca 249  Q
    ||||||||||||||    
T  31302570 atatatccactgca 31302583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 31353173 - 31353334
Alignment:
Q  88 agttacccaatcaacaagagagaagcattcatcccttggcctattcatggtgttgtgcttcccactaacaatttccaaggcaacaactccaaaactataa 187  Q
    ||||||||| || | |||||||||   ||| ||| ||| || || ||||||||||  ||| || ||| | |||||||||||||||| |||||||||||||    
T  31353173 agttacccattccagaagagagaatgcttcctcctttgaccgatacatggtgttgctctttccgctagcgatttccaaggcaacaattccaaaactataa 31353272  T
Q  188 acatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccactgca 249  Q
    ||||| ||||| || |||||||| || |||||||||||||| ||||||||||||||||||||    
T  31353273 acatctgctttgtctgtcaaataaccatgcattgcatattcaggagccatatatccactgca 31353334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 31278544 - 31278653
Alignment:
Q  149 ccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccactgc 248  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||| ||||| || |||||||| || |||||||||||||| |||||||| ||||||||||    
T  31278544 ccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattcaggagccatgtatccactgc 31278643  T
Q  249 aacattgaaa 258  Q
    |  |||||||    
T  31278644 ataattgaaa 31278653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 31371320 - 31371420
Alignment:
Q  149 ccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccactgc 248  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||| ||||| || |||||||| || |||||||||||||| |||||||| ||||||||||    
T  31371320 ccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccatgcattgcatattcaggagccatgtatccactgc 31371419  T
Q  249 a 249  Q
    |    
T  31371420 a 31371420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 31381832 - 31381932
Alignment:
Q  149 ccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccactgc 248  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||| ||||| || |||||||| ||  ||||||||||||| |||||||| ||||||||||    
T  31381832 ccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaaataaccacgcattgcatattcaggagccatgtatccactgc 31381931  T
Q  249 a 249  Q
    |    
T  31381932 a 31381932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 31288127 - 31288241
Alignment:
Q  133 catggtgttgtgcttcccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctgga 232  Q
    ||||||||||  | ||||||||||||||||||| ||||||| ||| |||||||||||||| ||||| || ||||| |  || |||||||||||||| |||    
T  31288127 catggtgttgctcctcccactaacaatttccaaagcaacaattccgaaactataaacatctgctttgtctgtcaatttaccatgcattgcatattcggga 31288226  T
Q  233 gccatatatccactg 247  Q
    ||||| |||||||||    
T  31288227 gccatgtatccactg 31288241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 31313226 - 31313317
Alignment:
Q  155 acaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccact 246  Q
    ||||||||||||||||||| |||||||||||||||| |  |  |  | |||||||| || |||||||| ||||| |||||||||||||||||    
T  31313226 acaatttccaaggcaacaattccaaaactataaacaccgtccctgactgtcaaataaccatgcattgcgtattcaggagccatatatccact 31313317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 2712003 - 2712035
Alignment:
Q  217 cattgcatattctggagccatatatccactgca 249  Q
    ||||||||||||||||| |||||||||||||||    
T  2712003 cattgcatattctggagacatatatccactgca 2712035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 249
Target Start/End: Original strand, 36209851 - 36209942
Alignment:
Q  158 atttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccactgca 249  Q
    |||||||| ||||||| |||||||||||||||||| ||||| || |||||||| || ||||| |||||||||||||||||||||||||||||    
T  36209851 atttccaatgcaacaattccaaaactataaacatctgctttgtcggtcaaataaccatgcatggcatattctggagccatatatccactgca 36209942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 246
Target Start/End: Original strand, 482855 - 482884
Alignment:
Q  217 cattgcatattctggagccatatatccact 246  Q
    ||||||||||||||||||||||||||||||    
T  482855 cattgcatattctggagccatatatccact 482884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 21002376 - 21002284
Alignment:
Q  155 acaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccactg 247  Q
    |||||||||||   ||||| |||||||||||||||||| ||||| || |||||||| || ||||| ||||| || |||||||| |||||||||    
T  21002376 acaatttccaatataacaattccaaaactataaacatctgctttgtctgtcaaataaccatgcatagcatactcaggagccatgtatccactg 21002284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 19874975 - 19875073
Alignment:
Q  149 ccactaacaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccactg 247  Q
    |||||||||||||||||   ||||| |||||||||||||||||| || || || ||||| || || |||||  |||| || |||||||| |||||||||    
T  19874975 ccactaacaatttccaatataacaattccaaaactataaacatctgccttgtctgtcaagtaaccatgcatatcatactcaggagccatgtatccactg 19875073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 10401455 - 10401515
Alignment:
Q  173 actccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggag 233  Q
    |||||||||||||||||||| | ||||||||  || | |||  ||||||||||||||||||    
T  10401455 actccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggag 10401515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 20062691 - 20062615
Alignment:
Q  170 acaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccact 246  Q
    ||||||||||| ||||| ||||| ||||| || ||||| || ||  |||| ||||||||||||||||| || |||||    
T  20062691 acaactccaaagctatatacatctgctttatcagtcaagtacccccgcatggcatattctggagccatgtagccact 20062615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 21008991 - 21009083
Alignment:
Q  155 acaatttccaaggcaacaactccaaaactataaacatccgctttctccgtcaaatatccgtgcattgcatattctggagccatatatccactg 247  Q
    |||||||||||   ||||| |||||||||||||||||| || || || ||||| || || ||||| ||||| || |||||||| || ||||||    
T  21008991 acaatttccaatataacaattccaaaactataaacatctgccttgtctgtcaagtaaccatgcatagcatactcaggagccatgtacccactg 21009083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 5804155 - 5804115
Alignment:
Q  210 atccgtgcattgcatattctggagccatatatccactgcaa 250  Q
    |||| |||| |||||||||||||| ||||||||||||||||    
T  5804155 atccatgcactgcatattctggaggcatatatccactgcaa 5804115  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 5855880 - 5855840
Alignment:
Q  210 atccgtgcattgcatattctggagccatatatccactgcaa 250  Q
    |||| |||| |||||||||||||| ||||||||||||||||    
T  5855880 atccatgcactgcatattctggaggcatatatccactgcaa 5855840  T

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