View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_high_26 (Length: 257)
Name: NF6473_high_26
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 35283584 - 35283445
Alignment:
| Q |
105 |
ggaggaattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcg |
204 |
Q |
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| T |
35283584 |
ggaggaattctttgctcgtccgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagttttacactcg |
35283485 |
T |
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| Q |
205 |
tcttttagtattcaaaactgaataacaactactcacaggt |
244 |
Q |
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| T |
35283484 |
tcttttagtattcaaaactgaataacaactactcacaggt |
35283445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 35278069 - 35277934
Alignment:
| Q |
109 |
gaattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtctt |
208 |
Q |
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| T |
35278069 |
gaattctttgctcgtctgatacctgtgatttaattaaagtatgggatctcaatcagcgtgtcataatgaagacctttatggtgagtcctacactcgtctt |
35277970 |
T |
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| Q |
209 |
ttagtattcaaaactgaataacaactactcacaggt |
244 |
Q |
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| T |
35277969 |
ttagtattcaaaactgaataacaactactcacaggt |
35277934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 35241286 - 35241152
Alignment:
| Q |
105 |
ggaggaattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcg |
204 |
Q |
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| T |
35241286 |
ggaggaactctttgctcgtccgataccagtaatgtaattaaagtatgggatctcaatcagcgtgtcaggattaaccactgtattgtgagtcttacactca |
35241187 |
T |
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| Q |
205 |
tcttttagtattcaaaactgaataacaactactca |
239 |
Q |
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| T |
35241186 |
tcttttagtattcaaaactgaatgacaactactca |
35241152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 35283718 - 35283625
Alignment:
| Q |
1 |
gtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatatatatatgtatatgtattgctcgagagagtgttgtgcaatgttgtt |
100 |
Q |
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| T |
35283718 |
gtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatat--------atatgtattgctcgagagagtgttgtgcaatgttgtt |
35283627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 35271386 - 35271266
Alignment:
| Q |
110 |
aattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtcttt |
209 |
Q |
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|||| |||||||||||||||| ||||||| ||||||||||||||| ||| | ||| |||||| ||| || ||||||| |||||||| |||||| | ||| |
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| T |
35271386 |
aattctttgctcgtctgatacatgtgatgcaattaaagtatgggatctcgaacagtgtgtcacgattaacaactttacagtgagtctaacactcatattt |
35271287 |
T |
|
| Q |
210 |
tagtattcaaaactgaataac |
230 |
Q |
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| T |
35271286 |
tagtattcaaaactgaataac |
35271266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 35275391 - 35275295
Alignment:
| Q |
133 |
gtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtcttttagtattcaaaactgaataa |
229 |
Q |
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| T |
35275391 |
gtgatgcaattaaattatgggatctcaatcagcgtgtcatgattagcaacattaaggtgagtctgacacttatattttagtattcaaaactgaataa |
35275295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 35241416 - 35241357
Alignment:
| Q |
1 |
gtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatatatata |
60 |
Q |
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|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
35241416 |
gtccttccattgtaacttgaggattgattcattatgttttgatgtttcatgatatatata |
35241357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 35275544 - 35275487
Alignment:
| Q |
2 |
tccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatatatat |
59 |
Q |
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| T |
35275544 |
tccttcctttgtaacttgaggattaattcattatgttttgatgtttcatcatatatat |
35275487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 35287085 - 35286991
Alignment:
| Q |
134 |
tgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtcttttagtattcaaaactgaata |
228 |
Q |
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||||| |||| |||||||||| ||||||| | || | | ||| || |||| || |||||||||||||||| |||||| ||||||||||| ||||| |
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| T |
35287085 |
tgatggaattcaagtatgggatctcaatcggtgtattaagattaaaaactgtaaggtgagtcttacactcctctttttgtattcaaaacagaata |
35286991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 35253529 - 35253480
Alignment:
| Q |
105 |
ggaggaattatttgctcgtctgatacctgtgatgtaattaaagtatggga |
154 |
Q |
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| T |
35253529 |
ggaggagttctttgcacgtccgatacctgtgatgtaattaaagtatggga |
35253480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35278207 - 35278148
Alignment:
| Q |
1 |
gtccttccttt-gtaacttgatgattggttcattatgttttgatgtttcatgatatatat |
59 |
Q |
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||||||||||| |||||||||||||| ||| || |||||||||||||||||||| |||| |
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| T |
35278207 |
gtccttccttttgtaacttgatgattaattcgttgtgttttgatgtttcatgatacatat |
35278148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 35271496 - 35271467
Alignment:
| Q |
28 |
ttcattatgttttgatgtttcatgatatat |
57 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35271496 |
ttcattatgttttgatgtttcatgatatat |
35271467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35287247 - 35287195
Alignment:
| Q |
1 |
gtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgat |
53 |
Q |
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| T |
35287247 |
gtccttcctttgtaacttgaggattgatgccttatgtcttgctgtttcatgat |
35287195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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