View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_high_3 (Length: 464)
Name: NF6473_high_3
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 28432491 - 28432061
Alignment:
| Q |
1 |
tattaccgtattgttcatttcagtgtaaatctacatcactacatggggatcaaaaggggaagctataatattgttacaaattacaatcatgtcaactacg |
100 |
Q |
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| T |
28432491 |
tattaccgtattgttcatttcagtgtaaatctacatcactacatggggatcaaaaggggaagctataatattgttacaaattacaatcatgtcaactacg |
28432392 |
T |
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| Q |
101 |
ttaggtttattcatgttatctgttttgtgacttcgtttatgctgggaatgggattgatactcaataaagcaccattgacctgcttagtacatggggcccg |
200 |
Q |
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| T |
28432391 |
ttaggtttattcatgttatctgttttgtgacttcgtttatgctgggaatgggattgatactcaataaagcaccattgacctgcttagtacatggggcccg |
28432292 |
T |
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| Q |
201 |
ttggaattgtagatgcatttatggagttgagtattgcaacttgtaactgaggttaatgtcttatgcactacaaagccttatcattcatctgttgcatttt |
300 |
Q |
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| T |
28432291 |
ttggaattgtagatgcatttatggagttgagtattgcaacttgtaactgaggttaatgtcttatgcactacaaagccttatcattcatctgttgcatttt |
28432192 |
T |
|
| Q |
301 |
gggtttttaaaaattctaagctgtgcatcttaggcgtgtcttatggaaaataaccattatattttagactcggtcaatcgtcctcaaactcgaaattatg |
400 |
Q |
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| T |
28432191 |
gggtttttaaaaattctaagctgtgcatcttaggcgtgtcttatggaaaataaccattatattttagactcggtcaatcgtcc------------ttatg |
28432104 |
T |
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| Q |
401 |
tgcaagtctgtctgagttatacacaaactagagtttttggcaa |
443 |
Q |
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| T |
28432103 |
tgcaactctgtctgagttatacacaaactagagtttttggcaa |
28432061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 6421628 - 6421687
Alignment:
| Q |
248 |
tgaggttaatgtcttatgcactacaaagccttatcattcatctgttgcattttgggtttt |
307 |
Q |
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| T |
6421628 |
tgaggttaatgtttaatacactacaaagacttatcatttagctgttgcattttgggtttt |
6421687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 38220119 - 38220073
Alignment:
| Q |
266 |
cactacaaagccttatcattcatctgttgcattttgggtttttaaaa |
312 |
Q |
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| T |
38220119 |
cactacagagccttatcattcaactgatgcattttgggttttaaaaa |
38220073 |
T |
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