View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_high_31 (Length: 239)
Name: NF6473_high_31
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 6941984 - 6942196
Alignment:
| Q |
4 |
aaatcaattgctatttttgattaaaattgtttttcttttgtaagaacatgtttcttcccaccatactcattttcaacatgggggactccaaccataaact |
103 |
Q |
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| T |
6941984 |
aaatcaattgctatttttgattaaaattgtttttcttttataagaacatgtttcttcccaccat-------ttcatcatgggggactccaaccataaact |
6942076 |
T |
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| Q |
104 |
agtaaccaaattagtgacaaaatgcaactcccattaaagttgctgttatggggctgtcctaaaccaagttgatcaaaatgtatgtattgtattgtattag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6942077 |
agtaaccaaattagtgacaaaatgcaactcccattaaagttgctgttatggggctgtcctaaaccaagttgatcaaaatgtatgtattgtattgtattag |
6942176 |
T |
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| Q |
204 |
acggaattagtccatacatt |
223 |
Q |
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|||||||||||||||||||| |
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| T |
6942177 |
acggaattagtccatacatt |
6942196 |
T |
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