View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_high_32 (Length: 236)
Name: NF6473_high_32
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30072788 - 30073010
Alignment:
| Q |
1 |
atttaatcattgagattaaaagtacaatcaactttcgatcttagtagttgtaagaacaacattaatcatctttaggaagaaggattataatacacataca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30072788 |
atttaatcattgagattaaaagtacaatcaactttcgatcttagtagttgtaagaacaacattaatcatctttaggaagaaggattataatacacataca |
30072887 |
T |
|
| Q |
101 |
tgatttatacaaagatatagagtaggaataagtatatttcagattgcttttgatatttgtaattataagtgattatgaatttgatctcagtattctgcat |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30072888 |
tgatttatacaaaaatatagagtaggaataagtatatttcagattgcttttaatatttgtaattataagtgattatgaatttgatctcagtattctgcag |
30072987 |
T |
|
| Q |
201 |
acttttgtaatcgggtctttttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
30072988 |
acttttgtaatcgggtctttttt |
30073010 |
T |
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