View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_high_5 (Length: 431)
Name: NF6473_high_5
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 142 - 416
Target Start/End: Complemental strand, 4886338 - 4886064
Alignment:
| Q |
142 |
agtgttttggtcctatctctcttctcactctctcactcaacaaaaagaacccaccttctttatcactcttatcctatgccctcagctctcacatcgataa |
241 |
Q |
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| T |
4886338 |
agtgttttggtcctatctctcttctcactctctcactcaacaaaaaaaacccaccttctttatcactcttatcatatgccctcagctctcacatcgataa |
4886239 |
T |
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| Q |
242 |
caaaatacgatcacacaacggctgcaacatagacccaactcatagctctcacattgatgtaaaaaattcatcattatcttgcttcattgaatcaaatttc |
341 |
Q |
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| T |
4886238 |
caaaatatgatcacacaacggctgcaacatagacccaactcatagctctcacattgatgtaagaaattcatcattatcttgcttcattgaatcaaatttc |
4886139 |
T |
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| Q |
342 |
agggtttctccaattttacgaatgttgaagttattttgcgatcctccatttttctccaccgttgaagccatttct |
416 |
Q |
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| T |
4886138 |
agggtttctccaattttacgaatgttgaagctattttgcgatcctccatttttctccaccgttgaagccgtttct |
4886064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 4886416 - 4886378
Alignment:
| Q |
65 |
ctgagagtttctattggtaattgtttttgagagttttac |
103 |
Q |
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| T |
4886416 |
ctgagagtttctattggtaattgtttttgagagttttac |
4886378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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