View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6473_low_1 (Length: 565)

Name: NF6473_low_1
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6473_low_1
NF6473_low_1
[»] chr1 (5 HSPs)
chr1 (18-315)||(46003114-46003411)
chr1 (469-514)||(15061963-15062008)
chr1 (523-558)||(46003658-46003693)
chr1 (470-516)||(46003584-46003630)
chr1 (470-514)||(7503584-7503628)
[»] chr8 (4 HSPs)
chr8 (470-514)||(42543389-42543433)
chr8 (469-514)||(34474069-34474113)
chr8 (470-514)||(37101594-37101638)
chr8 (470-514)||(45101515-45101558)
[»] chr4 (6 HSPs)
chr4 (470-514)||(31240767-31240811)
chr4 (470-514)||(41952947-41952991)
chr4 (470-514)||(36792451-36792495)
chr4 (475-514)||(52392133-52392172)
chr4 (470-503)||(6953307-6953340)
chr4 (470-514)||(1580191-1580235)
[»] chr5 (5 HSPs)
chr5 (470-509)||(12661860-12661899)
chr5 (470-503)||(10232618-10232651)
chr5 (470-509)||(13613877-13613916)
chr5 (471-509)||(16202840-16202878)
chr5 (470-507)||(21749477-21749514)
[»] chr7 (4 HSPs)
chr7 (469-514)||(40717147-40717192)
chr7 (469-505)||(4182524-4182560)
chr7 (470-514)||(19426699-19426742)
chr7 (470-514)||(22330540-22330583)
[»] chr3 (4 HSPs)
chr3 (473-514)||(51650478-51650519)
chr3 (470-514)||(6126573-6126617)
chr3 (470-503)||(32687879-32687912)
chr3 (470-514)||(31249230-31249274)
[»] chr2 (4 HSPs)
chr2 (470-503)||(12066028-12066061)
chr2 (470-514)||(19913903-19913947)
chr2 (469-509)||(30996830-30996870)
chr2 (470-514)||(45515508-45515551)
[»] chr6 (1 HSPs)
chr6 (470-503)||(9954667-9954700)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 46003114 - 46003411
Alignment:
Q  18 ctccttttactatatcttgtcacgtaggaatctaactcctcctccaagtagagctgctaannnnnnncattatgtatgtagctagataccctttgtcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  46003114 ctccttttactatatcttgtcacgtaggaatctaactcctcctccaagtagagctgctaatttttttcattatgtatgtagctagataccctttgtcttt 46003213  T
Q  118 tttggcttcactcgtcatttcaaaatgtaaatctcaaacaaagaacaaaagatattacatataaagaacttataatagaaaaaataatacaaggaaggaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46003214 tttggcttcactcgtcatttcaaaatgtaaatctcaaacaaagaacaaaagatattacatataaagaacttagaatagaaaaaataatacaaggaaggaa 46003313  T
Q  218 aatacttgtatgtcacagtaatttaaatacaccatttttcatacatatttcatttagttatcttaaaaatacatggttgtgagcatgtaagactttat 315  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46003314 aatacttgtatgtcacaataatttaaatacaccatttttcatacatatatcatttagttatcttaaaaatacatggttgtgagcatgtaagactttat 46003411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 15061963 - 15062008
Alignment:
Q  469 aaaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  15061963 aaaaagagagaaaaaaaaagttgtcaccaaaagttatatgaaatgg 15062008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 523 - 558
Target Start/End: Original strand, 46003658 - 46003693
Alignment:
Q  523 ttcaaaatttgaagcattgttctctctctatctgtg 558  Q
    ||||||||||||||||||||||||||||||||||||    
T  46003658 ttcaaaatttgaagcattgttctctctctatctgtg 46003693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 516
Target Start/End: Original strand, 46003584 - 46003630
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatggag 516  Q
    |||||||||| |||||||||||||| ||||| |||||||| ||||||    
T  46003584 aaaagagagagaaaagaagttgtcatcaaaaattatatgacatggag 46003630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 7503584 - 7503628
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    ||||||||||||||| || ||||||||||||||| ||||| ||||    
T  7503584 aaaagagagaaaaaaaaaattgtcaccaaaagttgtatgaaatgg 7503628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 42543433 - 42543389
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
T  42543433 aaaagagagaaaaaagaagttgtcaccaaaagttgtatgaaatgg 42543389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Original strand, 34474069 - 34474113
Alignment:
Q  469 aaaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||||    
T  34474069 aaaaagagagaaaa-agaagttgtcaccaaaagttgtatgaaatgg 34474113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 37101638 - 37101594
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    |||||||||||||||||||||||||| |||| || ||||| ||||    
T  37101638 aaaagagagaaaaaagaagttgtcacgaaaaattgtatgaaatgg 37101594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 45101515 - 45101558
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||    
T  45101515 aaaagagagaaaaaa-aagttgtcaccaaaagttgtatgaaatgg 45101558  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 31240767 - 31240811
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
T  31240767 aaaagagagaaaaaagaagttgtcaccaaaagttgtatgaaatgg 31240811  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 41952947 - 41952991
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||    
T  41952947 aaaagagagaaaaaaaaagttgtcaccaaaagttatatgaaatgg 41952991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 36792451 - 36792495
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||    
T  36792451 aaaagagagagaaaagaagttgtcaccaaaagttgtatgaaatgg 36792495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 514
Target Start/End: Complemental strand, 52392172 - 52392133
Alignment:
Q  475 agagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  52392172 agagaaaaaagaagttgtcaccaaaagttgtatgaaatgg 52392133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 503
Target Start/End: Complemental strand, 6953340 - 6953307
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagtt 503  Q
    |||||||||| |||||||||||||||||||||||    
T  6953340 aaaagagagagaaaagaagttgtcaccaaaagtt 6953307  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 1580235 - 1580191
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    ||||||||||||||| |||||||||| ||||||| ||||| ||||    
T  1580235 aaaagagagaaaaaaaaagttgtcacaaaaagttgtatgaaatgg 1580191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 509
Target Start/End: Complemental strand, 12661899 - 12661860
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatga 509  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  12661899 aaaagagagaaaaaagaagttgtcaccaaaagttgtatga 12661860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 503
Target Start/End: Original strand, 10232618 - 10232651
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagtt 503  Q
    ||||||||||||||||||||||||||||||||||    
T  10232618 aaaagagagaaaaaagaagttgtcaccaaaagtt 10232651  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 509
Target Start/End: Complemental strand, 13613916 - 13613877
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatga 509  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  13613916 aaaagagagaaaaaagaaattgtcaccaaaagttgtatga 13613877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 509
Target Start/End: Original strand, 16202840 - 16202878
Alignment:
Q  471 aaagagagaaaaaagaagttgtcaccaaaagttatatga 509  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  16202840 aaagagagaaaaaagaagttgtcactaaaagttgtatga 16202878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 507
Target Start/End: Original strand, 21749477 - 21749514
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatat 507  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  21749477 aaaagagagaaaaaagaaattgtcaccaaaaattatat 21749514  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 40717192 - 40717147
Alignment:
Q  469 aaaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    ||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  40717192 aaaaagagagaaaaaagaagttgtcacaaaaagttgtatgaaatgg 40717147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 4182524 - 4182560
Alignment:
Q  469 aaaaagagagaaaaaagaagttgtcaccaaaagttat 505  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  4182524 aaaaagagagagaaaataagttgtcaccaaaagttat 4182560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 19426699 - 19426742
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||    
T  19426699 aaaagagagaaaaaa-aagttgtcaccaaaagttgtatgaaatgg 19426742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 22330583 - 22330540
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||    
T  22330583 aaaagagagaaaaaa-aagttgtcaccaaaaattatatgaaatgg 22330540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 473 - 514
Target Start/End: Original strand, 51650478 - 51650519
Alignment:
Q  473 agagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    ||||||||||||||||||||||||||||||| ||||| ||||    
T  51650478 agagagaaaaaagaagttgtcaccaaaagttgtatgaaatgg 51650519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 6126573 - 6126617
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||||    
T  6126573 aaaagagagaaaaaagaagttgtaaccaaaagttgtatgaaatgg 6126617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 503
Target Start/End: Complemental strand, 32687912 - 32687879
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagtt 503  Q
    ||||||||||||||||||||| ||||||||||||    
T  32687912 aaaagagagaaaaaagaagttatcaccaaaagtt 32687879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 31249274 - 31249230
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    |||||||| |||||| |||||||||||||||||| ||||| ||||    
T  31249274 aaaagagaaaaaaaaaaagttgtcaccaaaagttgtatgaaatgg 31249230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 503
Target Start/End: Original strand, 12066028 - 12066061
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagtt 503  Q
    ||||||||||||||||||||||||||||||||||    
T  12066028 aaaagagagaaaaaagaagttgtcaccaaaagtt 12066061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 19913903 - 19913947
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    ||||||||||||||| ||||||||||| |||||| ||||| ||||    
T  19913903 aaaagagagaaaaaaaaagttgtcaccgaaagttgtatgaaatgg 19913947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 30996830 - 30996870
Alignment:
Q  469 aaaaagagagaaaaaagaagttgtcaccaaaagttatatga 509  Q
    ||||||||||| |||||||||||||||||||| || |||||    
T  30996830 aaaaagagagagaaaagaagttgtcaccaaaaattgtatga 30996870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 45515551 - 45515508
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagttatatgagatgg 514  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||||    
T  45515551 aaaagagagaaaaa-gaagttgtcaccaaaagttgtatgaaatgg 45515508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 503
Target Start/End: Original strand, 9954667 - 9954700
Alignment:
Q  470 aaaagagagaaaaaagaagttgtcaccaaaagtt 503  Q
    |||||||||||| |||||||||||||||||||||    
T  9954667 aaaagagagaaagaagaagttgtcaccaaaagtt 9954700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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