View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6473_low_10 (Length: 384)

Name: NF6473_low_10
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6473_low_10
NF6473_low_10
[»] chr7 (4 HSPs)
chr7 (128-371)||(34508330-34508572)
chr7 (46-100)||(34508590-34508644)
chr7 (60-100)||(19073639-19073679)
chr7 (60-100)||(39172991-39173031)
[»] scaffold0019 (1 HSPs)
scaffold0019 (60-100)||(134377-134417)
[»] chr1 (5 HSPs)
chr1 (60-100)||(641520-641560)
chr1 (60-100)||(9618688-9618728)
chr1 (60-100)||(27650057-27650097)
chr1 (61-100)||(27649223-27649262)
chr1 (62-100)||(641019-641057)
[»] chr4 (2 HSPs)
chr4 (60-100)||(46165712-46165752)
chr4 (60-100)||(46169264-46169304)
[»] chr3 (2 HSPs)
chr3 (60-100)||(11016731-11016771)
chr3 (60-106)||(21343557-21343603)
[»] chr2 (3 HSPs)
chr2 (60-100)||(2270858-2270898)
chr2 (46-103)||(36509932-36509988)
chr2 (60-96)||(12252093-12252129)
[»] chr8 (1 HSPs)
chr8 (60-106)||(45251997-45252043)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 128 - 371
Target Start/End: Complemental strand, 34508572 - 34508330
Alignment:
Q  128 attcttgttcatatatgcataatgtgaactaaaactacatacctatacattatttaagtttatgctaattaaatttaggtgtattttgtctaaattttta 227  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34508572 attcttgttcatatatgaataatgtgaactaaaactacatacctatacgttatttaagtttatgctaattaaatttaggtgtattttgtctaaattttta 34508473  T
Q  228 gttctaagtacacctctaagttacattttgaaatcgcttaaaccctgtgttgaagtgctatgcccaaaatttacatgtatacgttgagttcacgatataa 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34508472 gttctaagtacacctctaagttacattttgaaatcgcttaaacctcgtgttgaagtgctatgcccaaaatttacatgtatacgttgagttcacgatataa 34508373  T
Q  328 ctcatatacaattatcaattcaaataataatatggtacatgatg 371  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  34508372 ctcatatacaattatcaattcaaat-ataatatgttacatgatg 34508330  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 34508644 - 34508590
Alignment:
Q  46 ttttcctcggtagtttaactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    ||||||||||||||||||||| | | | |||||| ||||||||||||||||||||    
T  34508644 ttttcctcggtagtttaactgtcaaaggacattttggtaaattactagtgtgaca 34508590  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 19073639 - 19073679
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    ||||||||||||| | |||||||||||||||||||||||||    
T  19073639 ttaactgccgagggatatttcggtaaattactagtgtgaca 19073679  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 39173031 - 39172991
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    |||||||||||||   |||||||||||||||||||||||||    
T  39173031 ttaactgccgaggggtatttcggtaaattactagtgtgaca 39172991  T

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Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 134377 - 134417
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  134377 ttaactgccgaggagcatttcggtaaattactagtgtgaca 134417  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 641520 - 641560
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  641520 ttaactgcggaggaacatttcggtaaattactagtgtgaca 641560  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 9618728 - 9618688
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  9618728 ttaactgccaaggaacatttcggtaaattactcgtgtgaca 9618688  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 27650057 - 27650097
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  27650057 ttaactgccgaggggcatttcggtaaattactagtgtgaca 27650097  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 27649262 - 27649223
Alignment:
Q  61 taactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  27649262 taactgccgaggggcatttcggtaaattactagtgtgaca 27649223  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 641057 - 641019
Alignment:
Q  62 aactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  641057 aactgccgatgagcatttcggtaaattactagtgtgaca 641019  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 46165752 - 46165712
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  46165752 ttaactgccgaaggacatttcggtaaattactagtgtgaca 46165712  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 46169264 - 46169304
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  46169264 ttaactgacgaggagcatttcggtaaattactagtgtgaca 46169304  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 11016771 - 11016731
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  11016771 ttaactgccgaggaacattttggtaaattacaagtgtgaca 11016731  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 21343557 - 21343603
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgacatagtca 106  Q
    ||||||| ||| | ||||||||||||||||||||||||||| |||||    
T  21343557 ttaactgtcgaaggacatttcggtaaattactagtgtgacacagtca 21343603  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 2270898 - 2270858
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgaca 100  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  2270898 ttaactgccgaggagtatttcggtaaattactagtgtgaca 2270858  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 36509988 - 36509932
Alignment:
Q  46 ttttcctcggtagtttaactgccgaggaacatttcggtaaattactagtgtgacatag 103  Q
    ||||||||||||||||| ||||||||| ||||||  |||| ||||| |||||||||||    
T  36509988 ttttcctcggtagttta-ctgccgagggacatttgagtaatttactcgtgtgacatag 36509932  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 12252129 - 12252093
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgt 96  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  12252129 ttaactgccgaggagcatttaggtaaattactagtgt 12252093  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 45252043 - 45251997
Alignment:
Q  60 ttaactgccgaggaacatttcggtaaattactagtgtgacatagtca 106  Q
    ||||||||||| |||||||| | |||||||||||||||||| |||||    
T  45252043 ttaactgccgatgaacattttgataaattactagtgtgacacagtca 45251997  T

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