View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6473_low_11 (Length: 383)

Name: NF6473_low_11
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6473_low_11
NF6473_low_11
[»] chr5 (2 HSPs)
chr5 (165-366)||(20322095-20322293)
chr5 (224-309)||(30997902-30997986)
[»] chr1 (2 HSPs)
chr1 (168-346)||(32610783-32610958)
chr1 (200-288)||(52779781-52779869)
[»] chr3 (3 HSPs)
chr3 (221-309)||(44666580-44666668)
chr3 (218-288)||(19584802-19584872)
chr3 (200-288)||(12298501-12298589)
[»] chr8 (1 HSPs)
chr8 (187-303)||(44231100-44231216)
[»] chr2 (1 HSPs)
chr2 (215-309)||(27034327-27034421)
[»] scaffold0329 (1 HSPs)
scaffold0329 (200-288)||(13110-13198)
[»] chr4 (3 HSPs)
chr4 (214-309)||(17131712-17131807)
chr4 (214-309)||(35089284-35089379)
chr4 (218-303)||(10869007-10869092)
[»] chr6 (2 HSPs)
chr6 (218-309)||(14618241-14618332)
chr6 (215-274)||(31962340-31962399)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 165 - 366
Target Start/End: Complemental strand, 20322293 - 20322095
Alignment:
Q  165 ttgatactaggagatccatcagtggtcagtgtatcttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttc 264  Q
    ||||||||||||||||||| |||||||| ||| | ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  20322293 ttgatactaggagatccattagtggtcaatgttttttcttagggaattctctcatttcatggagaacaaagaaacaagtgactgtttctagatcttcttc 20322194  T
Q  265 tgaagttgagtatcgtgctttagcttcagcaacttgtgagcttcattaatggttgatttatcttcttcaggatctccatgttacctgcatcaagcttcct 364  Q
    ||||| |||||| |||||||||||||||||||||||||||||||   ||||||||||||| |||||||| |||||||||||||| ||||  || ||||||    
T  20322193 tgaagctgagtaccgtgctttagcttcagcaacttgtgagcttc---aatggttgatttaccttcttcaagatctccatgttacttgcactaaacttcct 20322097  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 30997986 - 30997902
Alignment:
Q  224 tggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagcttcagcaacttgtgagcttca 309  Q
    ||||| |||||||| ||| | |||||||| |||||||| ||||||||||||||||  ||| |||||||| | ||||||||||||||    
T  30997986 tggaggacaaagaagcaaatcactgtttccaggtcctcatctgaagttgagtatcaggctctagcttca-ctacttgtgagcttca 30997902  T

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Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 168 - 346
Target Start/End: Complemental strand, 32610958 - 32610783
Alignment:
Q  168 atactaggagatccatcagtggtcagtgtatcttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctga 267  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| | | | |||||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  32610958 atactaggagatccatcagtggtcagtgtttcttcttagggaactctttaatttcatggagaacaaagaaacaagtgactatttctagatcctcttctga 32610859  T
Q  268 agttgagtatcgtgctttagcttcagcaacttgtgagcttcattaatggttgatttatcttcttcaggatctccatgtt 346  Q
    || |||||||| |||| ||||||| || |||||| ||||||   ||||| ||||||| ||||||||||| |||| ||||    
T  32610858 agctgagtatcatgctctagcttcggccacttgtaagcttc---aatggctgatttaccttcttcaggacctccttgtt 32610783  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 52779781 - 52779869
Alignment:
Q  200 ttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagc 288  Q
    |||||||  |||| ||| |||||||||||||||||||||||| | ||||| |||||||| || ||||||| ||||||| | ||||||||    
T  52779781 ttcttaggcaattctcttatttcatggagaacaaagaaacaaatcactgtatctaggtcttcatctgaagctgagtatagggctttagc 52779869  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 44666668 - 44666580
Alignment:
Q  221 tcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagcttcagcaacttgtgagcttca 309  Q
    ||||||||||||||||||||  ||||||| ||||| ||  | ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  44666668 tcatggagaacaaagaaacatataactgtatctagatcaccctctgaagctgagtatcgtgctttagcttcagccacttgtgagcttca 44666580  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 19584872 - 19584802
Alignment:
Q  218 atttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagc 288  Q
    |||||||||||||||||||||||| | ||||| |||||||| || ||||||| ||||||| | ||||||||    
T  19584872 atttcatggagaacaaagaaacaaatcactgtatctaggtcttcatctgaagctgagtatagggctttagc 19584802  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 12298501 - 12298589
Alignment:
Q  200 ttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagc 288  Q
    |||||||  |||| ||| |||||||||||||| ||||||||| | ||||| |||||||| || ||||||| ||||||| | ||||||||    
T  12298501 ttcttaggcaattctcttatttcatggagaacgaagaaacaaatcactgtatctaggtcttcatctgaagctgagtatagggctttagc 12298589  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 187 - 303
Target Start/End: Original strand, 44231100 - 44231216
Alignment:
Q  187 tggtcagtgtatcttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgcttta 286  Q
    |||||||||| ||||| |||  || | ||| ||||||||||||||||||||||||   ||||| ||||| || || ||||||| ||||||| | ||||||    
T  44231100 tggtcagtgtttcttcataggcaactctctgatttcatggagaacaaagaaacaaaccactgtgtctagatcttcctctgaagctgagtatagagcttta 44231199  T
Q  287 gcttcagcaacttgtga 303  Q
    |||||||||||||||||    
T  44231200 gcttcagcaacttgtga 44231216  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 309
Target Start/End: Complemental strand, 27034421 - 27034327
Alignment:
Q  215 ctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagcttcagcaacttgtgagcttca 309  Q
    ||||||||||||||||| |||||||||  |||||||||||| || ||| |||||| ||||||| | ||| | |||||||| |||||||| |||||    
T  27034421 ctcatttcatggagaaccaagaaacaaacaactgtttctagatcatctcctgaagctgagtatagggctcttgcttcagccacttgtgaacttca 27034327  T

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Target: scaffold0329 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 13110 - 13198
Alignment:
Q  200 ttcttagagaattatctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagc 288  Q
    |||||||  |||| ||| |||||||||||||||||||||||| | ||||| |||||||| || ||||||| ||||||| | ||||||||    
T  13110 ttcttaggcaattctcttatttcatggagaacaaagaaacaaatcactgtatctaggtcttcatctgaagctgagtatagggctttagc 13198  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 17131712 - 17131807
Alignment:
Q  214 tctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagcttcagcaacttgtgagcttca 309  Q
    ||||||||||||||||||||||||||||   | |||||| |||||||| ||||||| ||||||| | ||  | ||||| ||||||||||| |||||    
T  17131712 tctcatttcatggagaacaaagaaacaacctattgtttccaggtcctcctctgaagctgagtatagggccatggcttctgcaacttgtgaacttca 17131807  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 35089284 - 35089379
Alignment:
Q  214 tctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagcttcagcaacttgtgagcttca 309  Q
    ||||||||||||| |||| |||||||||   ||||||||||| || |||||||||| ||||||| | ||  | |||||||| |||||||| |||||    
T  35089284 tctcatttcatggcgaaccaagaaacaaaccactgtttctagatcatcttctgaagctgagtatagagcccttgcttcagccacttgtgaacttca 35089379  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 10869007 - 10869092
Alignment:
Q  218 atttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagcttcagcaacttgtga 303  Q
    ||||| |||||||||||||||||| | || |||||||| || || ||||||| ||| ||| | || || |||||||| ||||||||    
T  10869007 atttcttggagaacaaagaaacaaatcacagtttctagatcttcctctgaagctgaatatagggcattggcttcagctacttgtga 10869092  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 14618241 - 14618332
Alignment:
Q  218 atttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgagtatcgtgctttagcttcagcaacttgtgagcttca 309  Q
    |||||||||||||| ||||||||| ||| ||||||||| || ||||||||||| || ||| | ||||| | | | ||||||||||| |||||    
T  14618241 atttcatggagaaccaagaaacaattaattgtttctagatcttcttctgaagtagaatatagagctttgggtgccgcaacttgtgaacttca 14618332  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 31962340 - 31962399
Alignment:
Q  215 ctcatttcatggagaacaaagaaacaagtaactgtttctaggtcctcttctgaagttgag 274  Q
    |||||||| |||||||| ||||||||| ||||||||||||| ||||| |  |||||||||    
T  31962340 ctcatttcttggagaactaagaaacaattaactgtttctagatcctcattagaagttgag 31962399  T

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