View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_low_12 (Length: 369)
Name: NF6473_low_12
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_12 |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 24893508 - 24893857
Alignment:
| Q |
10 |
catcatcaaactgcgaagctcgatgcactaaagcctccacatacaagatttgaaaaggggtgtaatgttgtggggtgtaatgaaactcattttagagttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893508 |
catcatcaaactgcgaagctcgatgcactaaagcctccacatacaagatttgaaaaggggtgtaatgttgtggggtgtaatgaaactcattttagagttt |
24893607 |
T |
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| Q |
110 |
ttgatgagtggtaagtagaagtagaaggtgaaagtaattttctgttaatttaacatgctatgaaaattcaaatgatagaaacgagaaaagacacaagtaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893608 |
ttgatgagtggtaagtagaagtagaaggtgaaagtaattttctgttaatttaacatgctatgaaaattcaaatgatagaaacgagaaaagacacaagtaa |
24893707 |
T |
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| Q |
210 |
agagggcaacacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893708 |
agagggcaacacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgac |
24893807 |
T |
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| Q |
310 |
ttcaatctcacattagaaaatatactattcgacctagtatcccccctttg |
359 |
Q |
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| T |
24893808 |
ttcaatctcacattagaaaatatactattcgacctagtatcccccctttg |
24893857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 219 - 351
Target Start/End: Original strand, 24922635 - 24922767
Alignment:
| Q |
219 |
cacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | | |||||||||| |
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| T |
24922635 |
cacttactcagaaattccttcatatacagttccaaatgaaccacggcccaaaagctcacccttttgccaactcccaggagtaattacaggcttcaatctc |
24922734 |
T |
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| Q |
319 |
acattagaaaatatactattcgacctagtatcc |
351 |
Q |
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| T |
24922735 |
acattaggagatatactattcgacctagtatcc |
24922767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 219 - 351
Target Start/End: Original strand, 24998725 - 24998857
Alignment:
| Q |
219 |
cacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | | |||||||||| |
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| T |
24998725 |
cacttactcagaaattccttcatatacagttccaaatgaaccacggcccaaaagctcacccttttgccaactcccaggagtaattacaggcttcaatctc |
24998824 |
T |
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| Q |
319 |
acattagaaaatatactattcgacctagtatcc |
351 |
Q |
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| T |
24998825 |
acattaggagatatactattcgacctagtatcc |
24998857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 352
Target Start/End: Original strand, 24905545 - 24905676
Alignment:
| Q |
221 |
cttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgccaactcccgggagtaataagtgacttcaatctcac |
320 |
Q |
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|||||| ||||||||||||||||||| |||||| ||||| | |||||||| |||||||||| ||||||||| |||||||||| || | ||||||||| |
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| T |
24905545 |
cttactgagaaattccttcatatacaaatccaaacgaaccactacccaaaagttcacccttttcccaactcccaggagtaataactggcatcaatctcag |
24905644 |
T |
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| Q |
321 |
attagaaaatatactattcgacctagtatccc |
352 |
Q |
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|||||||||| ||| |||||| | |||||||| |
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| T |
24905645 |
attagaaaatgtacaattcgagcaagtatccc |
24905676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 24904739 - 24904784
Alignment:
| Q |
180 |
aatgatagaaacgagaaaagacacaagtaaagagggcaacacttac |
225 |
Q |
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|||| ||||||||| | |||| |||||||||||||||||||||||| |
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| T |
24904739 |
aatggtagaaacgaaataagatacaagtaaagagggcaacacttac |
24904784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 219 - 351
Target Start/End: Original strand, 35695 - 35834
Alignment:
| Q |
219 |
cacttactcagaaattcctt-catatacagttccaaatgaaccgcggccc-aaaagctcaccc-ttttgccaactcccgggagtaa--taagtgacttc- |
312 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| ||||||| || |||||| |
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| T |
35695 |
cacttactcagaaattccttacatatacagttccaaatgaaccacggcccaaaaagctcaccctttttgccaactcccaggagtaatttacaggacttca |
35794 |
T |
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| Q |
313 |
aatctcacatt-agaaaatatactattcgacctagtatcc |
351 |
Q |
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| T |
35795 |
aatctcacattaaggagatatactattcgacctagtatcc |
35834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 33023027 - 33023096
Alignment:
| Q |
218 |
acacttactcagaaattccttcatatacagttccaaatgaaccgcggcccaaaagctcacccttttgcca |
287 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||| | ||||||| ||||||||||||| |
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| T |
33023027 |
acacttactcagaaattccttcatagacagatccaaatgaaccaccccccaaaaagccacccttttgcca |
33023096 |
T |
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