View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_low_15 (Length: 352)
Name: NF6473_low_15
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 4936514 - 4936181
Alignment:
| Q |
18 |
acataagtatctgttctctcattcacccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtactaaacnnnnnnnnn-----gggcat |
112 |
Q |
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| T |
4936514 |
acataagtatatgttctctcattttcccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtactaaacaaaagaaaaaaaaagggcat |
4936415 |
T |
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| Q |
113 |
ttagatgttatgcagtttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacggaaggtaatcat |
212 |
Q |
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| T |
4936414 |
ttagatgttatgcagtttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacagaaggtaatcat |
4936315 |
T |
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| Q |
213 |
gttcgaggaactgtcgagcactaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccacttcggctagacctaaccttgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4936314 |
gttcgaggaactgtcgagcactaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccatttcggctagacctaaccttgg |
4936215 |
T |
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| Q |
313 |
ttcaaacttgacagttgacacctgttcttctcac |
346 |
Q |
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| T |
4936214 |
ttcaaacttgacagttgacacctgttcttatcac |
4936181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 4952219 - 4951881
Alignment:
| Q |
18 |
acataagtatctgttctctcattcacccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtactaaacnnnnnnnnn----------g |
107 |
Q |
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| T |
4952219 |
acataagtatctgttctctcatttgcccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtaccaaacaaaagaaagaaaaaaaaaag |
4952120 |
T |
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| Q |
108 |
ggcatttagatgttatgcagtttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacggaaggta |
207 |
Q |
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| T |
4952119 |
ggcatttagatgttatgcactttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacggaaggta |
4952020 |
T |
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| Q |
208 |
atcatgttcgaggaactgtcgagcactaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccacttcggctagacctaac |
307 |
Q |
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| T |
4952019 |
atcatgttcgaggaactgtcgagcactaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccacttcggctagacctaac |
4951920 |
T |
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| Q |
308 |
cttggttcaaacttgacagttgacacctgttcttctcac |
346 |
Q |
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| T |
4951919 |
cttggttcaaacttgacagttgactcctattcttatcac |
4951881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 27037312 - 27037268
Alignment:
| Q |
227 |
cgagcactaaatgtggatagctctcccaactaggattcaaacttt |
271 |
Q |
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| T |
27037312 |
cgagcactaaatgtgggtacctctcccagctaggagtcaaacttt |
27037268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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