View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_low_17 (Length: 350)
Name: NF6473_low_17
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 225204 - 225533
Alignment:
| Q |
1 |
cagtttgatatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcga |
100 |
Q |
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| T |
225204 |
cagtttgatatgtcaaaataaagctgagaagtggcattgtatatggccgcctttactagattatgggaaaccatattaacctctctcataaaaaacgcga |
225303 |
T |
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| Q |
101 |
cataagagttgttacgagataaaccaaaaggacataaagatataagtgtaacaataaaagtaaagaaggtggggcatgccataccaatcatggttccgtg |
200 |
Q |
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| T |
225304 |
cataagagttgttacgagataaaccaaaaggacataaagatataagtgtaacaataaaagtaaagaaggtggggcatgccataccaatcatggttccgtg |
225403 |
T |
|
| Q |
201 |
aagtattccaccatgaggaggcataatcgaaagttgaagctgctctttcaaaaacagataactgtgcccaacaatctcatccacttgtatatcaggatca |
300 |
Q |
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| T |
225404 |
aagtattccaccatgaggaggcataatcgaaagttgaagctgctctttcaaaaacagataactgtgcccaacaatttcatccacttgtatatcaggatca |
225503 |
T |
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| Q |
301 |
gaagcaaatatttgttgacttatatgtaag |
330 |
Q |
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| T |
225504 |
gaagcaaatatttgttgacttatatgtaag |
225533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 8746493 - 8746599
Alignment:
| Q |
9 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
108 |
Q |
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| T |
8746493 |
tatgttaaaataaagaagagaactagcattatatacggccgtctttgcaagttcatgagcaaccatattagcctctctcctagaaaactcgacataagag |
8746592 |
T |
|
| Q |
109 |
ttgttac |
115 |
Q |
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||||||| |
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| T |
8746593 |
ttgttac |
8746599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 233010 - 233070
Alignment:
| Q |
161 |
taaagaaggtggggcatgc----cataccaatcatggttccgtgaagtattccaccatgag |
217 |
Q |
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| T |
233010 |
taaagaaggtggggcatcccacacacaccaatcatggttccgtgaagtattccactatgag |
233070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 6955029 - 6955135
Alignment:
| Q |
9 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
108 |
Q |
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||||||||||||||| |||||| ||||||| |||| ||| ||||||| || | ||| | |||||||||| ||||||| || ||||| ||||||||||| |
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| T |
6955029 |
tatgtcaaaataaagatgagaattggcattatatacagccacctttgcaagttcatgagcaaccatattagtctctctcttagaaaactcgacataagag |
6955128 |
T |
|
| Q |
109 |
ttgttac |
115 |
Q |
| |
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||||||| |
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| T |
6955129 |
ttgttac |
6955135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 28695254 - 28695148
Alignment:
| Q |
9 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
108 |
Q |
| |
|
|||||||| |||||| |||||| || |||| ||||||| ||||||||| || | ||| | |||||||||| || |||| || ||||| ||| ||||||| |
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| T |
28695254 |
tatgtcaatataaagatgagaactgacattatatatggtcgcctttgcaagttcatgagcaaccatattagactgtctcctagaaaactcgaaataagag |
28695155 |
T |
|
| Q |
109 |
ttgttac |
115 |
Q |
| |
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||||||| |
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|
| T |
28695154 |
ttgttac |
28695148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 41289773 - 41289882
Alignment:
| Q |
8 |
atatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataaga |
107 |
Q |
| |
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|||| |||||||| || |||||| || |||| ||||||| ||| ||||| |||||||| | || ||||||| | ||||| || |||| |||||||||| |
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| T |
41289773 |
atatatcaaaatagagatgagaattgtcattatatatggtcgcttttgcaagattatgagcaatcatattagcatctcttttagaaaaatcgacataaga |
41289872 |
T |
|
| Q |
108 |
gttgttacga |
117 |
Q |
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|||||||||| |
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| T |
41289873 |
gttgttacga |
41289882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 32011625 - 32011520
Alignment:
| Q |
9 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
108 |
Q |
| |
|
|||||||||||| | |||||| | |||| | |||||||| ||||| |||||||| |||||||||| |||||||||| ||||| ||||||||||| |
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| T |
32011625 |
tatgtcaaaatatatatgagaatagacattatctatggccgtctttggaagattatgaacaaccatattattctctctcatagaaaactcgacataagag |
32011526 |
T |
|
| Q |
109 |
ttgtta |
114 |
Q |
| |
|
|||||| |
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|
| T |
32011525 |
ttgtta |
32011520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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