View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6473_low_19 (Length: 339)
Name: NF6473_low_19
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 35278491 - 35278183
Alignment:
| Q |
20 |
aataatcaatgcgagaaatattccaattcaatctttttattgtctgcataatg----tatttatctttatattgtggtttatacagcctttcatttgcta |
115 |
Q |
| |
|
|||||||||||||| |||| ||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35278491 |
aataatcaatgcgataaattttccaattccatctttttatggtctgcataattaacatatttatctttatattgtggtttatacagcctttcatttgcaa |
35278392 |
T |
|
| Q |
116 |
catggatacttttagttctgttactacttcagagtcacattcatctaccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttct |
215 |
Q |
| |
|
||||||||||| || |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35278391 |
catggatacttctacttctgttactgcctcagagtcacattcatctaccatcttagatgttagatttcaaccaggatccactatatttgcaacatcttct |
35278292 |
T |
|
| Q |
216 |
gctgataaaacagtaaaattatgggatgcnnnnnnngtgagtctctttcttttcatatccccttctactcactcttctgcattagtccttcc-tttgtaa |
314 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
35278291 |
gctgataaaacaataaaattctgggatgctaaaacggtgagtctctttcttttcataccccattctactcactctgctgcattagtccttccttttgtaa |
35278192 |
T |
|
| Q |
315 |
cttgatgat |
323 |
Q |
| |
|
||||||||| |
|
|
| T |
35278191 |
cttgatgat |
35278183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 60 - 319
Target Start/End: Complemental strand, 35241656 - 35241397
Alignment:
| Q |
60 |
tgtctgcataatgtatttatctttatattgtggtttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcat |
159 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||| || ||| || ||||||||| ||| |||||||||||| |
|
|
| T |
35241656 |
tgtctgcgtaatgtatttatctttatattatggtttaaacagcctttcatttgttacatcgacactggcgattgtgttactacgtcaaagtcacattcat |
35241557 |
T |
|
| Q |
160 |
ctaccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtgagtct |
259 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35241556 |
ctaccatcttagaagttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcaaaaaaagtgagtct |
35241457 |
T |
|
| Q |
260 |
ctttcttttcatatccccttctactcactcttctgcattagtccttcctttgtaacttga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35241456 |
ctttcttttcatatccccttctactcactcttctgcattagtccttccattgtaacttga |
35241397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 323
Target Start/End: Complemental strand, 35283934 - 35283695
Alignment:
| Q |
71 |
tgtatttatctttatattgtggtttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatctta |
170 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||||||||||||| || |||| | | || |||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
35283934 |
tgtatttatggttatattgtggttaatatagcctttcatttgcaacgtggaaagtcttgattctgttactacgtcagagtcacattcgtctaccatcttt |
35283835 |
T |
|
| Q |
171 |
gatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtgagtctctttcttttca |
270 |
Q |
| |
|
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35283834 |
gacgtgagatttcaaccaggatcaactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcaaaaaaagtgagtctcttt------- |
35283742 |
T |
|
| Q |
271 |
tatccccttctactcactcttctgcattagtccttcctttgtaacttgatgat |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35283741 |
------cttctactcactcttctgcattagtccttcctttgtaacttgatgat |
35283695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 82 - 317
Target Start/End: Complemental strand, 35253865 - 35253630
Alignment:
| Q |
82 |
ttatattgtggtttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatcttagatgttagatt |
181 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||| ||| | ||||||||| | | |||||||||| | ||||||||| || |||||||| |
|
|
| T |
35253865 |
ttatattgtggtttatatagcctttcatttgctacctggaaactggtctttctgttacggcattggagtcacatttagataccatcttcgaagttagatt |
35253766 |
T |
|
| Q |
182 |
tcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtgagtctctttcttttcatatccccttct |
281 |
Q |
| |
|
|||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
35253765 |
tcaaccaggatcaactgtgtttgcaacctcttctgctgataaaacagtaaaattatgggatgcaaacagtgtgagtctctttcttttcacatctccttct |
35253666 |
T |
|
| Q |
282 |
actcactcttctgcattagtccttcctttgtaactt |
317 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
35253665 |
actcactcatctgcattattccttcctatgtaactt |
35253630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 149 - 319
Target Start/End: Complemental strand, 35287400 - 35287228
Alignment:
| Q |
149 |
gtcacattcatctaccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnn |
248 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||| ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35287400 |
gtcacatttatctactatcttcgatgttagatttaaaccaggttcaactatatttgcaacatcctctgctgataaaacagtaaaattatgggatgcaaaa |
35287301 |
T |
|
| Q |
249 |
nnngtgagtctctttc-ttttcatat-ccccttctactcactcttctgcattagtccttcctttgtaacttga |
319 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35287300 |
aaagtgagtctctttctttttcacatcccccttctactcactcttctgcattagtccttcctttgtaacttga |
35287228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 316
Target Start/End: Complemental strand, 35271760 - 35271507
Alignment:
| Q |
69 |
aatgtatttatctttatattgtggtttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatct |
168 |
Q |
| |
|
|||||| | ||| ||||||||||||||| | |||||||||||||||||||||| ||| || |||| |||| || |||||| |||||| | | |||||| |
|
|
| T |
35271760 |
aatgtactgatccttatattgtggtttaaatagcctttcatttgctacatggaaactggtaattcttttacaacatcagagacacatttagatgccatct |
35271661 |
T |
|
| Q |
169 |
tagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgc------nnnnnnngtgagtctctt |
262 |
Q |
| |
|
|||| || ||||||| | ||||||| ||||||||||||| ||||||||||||| |||||||||| ||||| | || || ||| |||| |
|
|
| T |
35271660 |
tagaagtcagatttcgatcaggatcacctatatttgcaacttcttctgctgatagaacagtaaaactatggcacgcaaaaagaacaagagtaagtttctt |
35271561 |
T |
|
| Q |
263 |
tcttttcatatccccttctactcactcttctgcattagtccttcctttgtaact |
316 |
Q |
| |
|
||||||| || | ||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
35271560 |
tcttttcttagctccttctactcactcttctgcaatagtctttcctttgtaact |
35271507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 244
Target Start/End: Complemental strand, 35247258 - 35247083
Alignment:
| Q |
69 |
aatgtatttatctttatattgtggtttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatct |
168 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||| |||| | | | |||||||||| | | ||||||| ||| | || ||||| |
|
|
| T |
35247258 |
aatgtatttatccatatattgtggtttatatagcctttcatttgctacgtggaaagtcgtgcttctgttactgcattagagtcagatttagatatcatct |
35247159 |
T |
|
| Q |
169 |
tagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgc |
244 |
Q |
| |
|
|||| ||||||||||||||| ||| |||| |||||||||| ||||| |||| |||||||||| |||||||||| |
|
|
| T |
35247158 |
tagaagttagatttcaaccaaaatcaactagatttgcaacaacttctcgtgatggaacagtaaaactatgggatgc |
35247083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 35238528 - 35238385
Alignment:
| Q |
99 |
cagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatcttagatgttagatttcaaccaggatcgacta |
198 |
Q |
| |
|
|||||||| || |||||||||||||| | | || | ||||||| ||| ||||||||||| || | |||| ||| |||||||||||||||||| | | || |
|
|
| T |
35238528 |
cagcctttaatatgctacatggatacctgtgattgtattactacatcacagtcacattcagctcctatctcagaagttagatttcaaccaggaacaaata |
35238429 |
T |
|
| Q |
199 |
tatttgcaacatcttctgctgataaaacagtaaaattatgggat |
242 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
35238428 |
tatttgcaacttcttcctctgataaagcagtaaaattatgggat |
35238385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 216
Target Start/End: Complemental strand, 35275728 - 35275605
Alignment:
| Q |
93 |
tttatacagcctttcatttgctacatggatacttttagttctgttactacttcagagtcacattcatctaccatcttagatgttagatttcaaccaggat |
192 |
Q |
| |
|
|||||| |||||||||||||||||||||| | | || |||||||||| | ||||| ||||||| | |||||||||| ||||||||||||||| || |
|
|
| T |
35275728 |
tttatatagcctttcatttgctacatggaaattggtaattctgttacttcaatagagtaacattcagatgccatcttagaatttagatttcaaccagcat |
35275629 |
T |
|
| Q |
193 |
cgactatatttgcaacatcttctg |
216 |
Q |
| |
|
| ||||||||||||| ||||||| |
|
|
| T |
35275628 |
cacctatatttgcaacttcttctg |
35275605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University