View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6473_low_20 (Length: 327)

Name: NF6473_low_20
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6473_low_20
NF6473_low_20
[»] chr6 (1 HSPs)
chr6 (20-314)||(29461497-29461787)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 29461497 - 29461787
Alignment:
Q  20 aacattgcattagttaccttaatgcacaagtgaaagaattactat--taatttacctaaataaaaattggttacaatcaacaattcatttttacacacgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29461497 aacattgcattagttaccttaatgcacaagtgaaagaattactatattaatttacctaaataaaaattggttacaatcaacatttcatttttacacacgt 29461596  T
Q  118 aacattaacaacatatattaagatttttctcttnnnnnnnncatagtaaaactttcttctttatttcctttctatttttgacgaaattctaacacttatc 217  Q
    ||||||||||     |||||||| |||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29461597 aacattaaca-----tattaagacttttctcttaaaaaaa-catagtaaaactttcttctttatttcctttctatttttgacgaaattctaacacttatc 29461690  T
Q  218 aattaagttaataaattccaaataaagttttggcataattttacctctcatcaaacaaatatttaatcatgatttaacttacattcattccgtattc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29461691 aattaagttaataaattccaaataaagttttggcataattttacctctcatcaaacaaatatttaatcatgttttaacttacattcattccgtattc 29461787  T

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