View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_low_22 (Length: 314)
Name: NF6473_low_22
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 78 - 281
Target Start/End: Original strand, 6941767 - 6941971
Alignment:
| Q |
78 |
acacacaaacaacccgcacttcctctagcgagaaatcgaacatttgaaagtcttctacnnnnnnncggtattttcaaatctggaattgtaatttacatgc |
177 |
Q |
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| T |
6941767 |
acacacaaacaactcgcacttcctctagcgagaaatcgaacatttgaaagtcttctactttttttcggtattttcaaatctggaattgtaatttacatgc |
6941866 |
T |
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| Q |
178 |
attttttgtgttgtgagttgataaagatatttatgataagatttttctgtctcaagttaccgg-ttatttcctggttgaatcaaatcaactgctatttca |
276 |
Q |
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| T |
6941867 |
attttttgtgttgtgagttgataaagatatttatgataagatttttctgtctcaagttaccggtttatttcctggttgagtcaaatcaacttctatttca |
6941966 |
T |
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| Q |
277 |
ctacc |
281 |
Q |
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||||| |
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| T |
6941967 |
ctacc |
6941971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 6940459 - 6940529
Alignment:
| Q |
10 |
attattcttacttatatgttgtt-aacatttactttttgctacaatgtgaaacttataatttatacttaac |
79 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6940459 |
attattcttacttatatgttgttcaacatttactttttgctacaatgtgaaacttctaatttatacttaac |
6940529 |
T |
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