View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6473_low_25 (Length: 299)
Name: NF6473_low_25
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 26206256 - 26205984
Alignment:
| Q |
11 |
caaaggccaaaatgcttgtgatgaaaatccaggtgcagaaaccagtaaagattttactgctgggagtgaagttcaagaaccatcagaacagcagttgact |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26206256 |
caaaggccaaaatgcttgtgatgaaaatccaggtgcagaaaccagtaaagattttactgctgggagtgaagttcaagaaccatcagaacaccagttgact |
26206157 |
T |
|
| Q |
111 |
tctccacaggtcaatgccaatctattgataaaaatgtctttgaatcaaatatgatactttttatggagataaaaatgaaagaaacaccaaaagtatagca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26206156 |
tctccacaggtcaatgccaatctattgataaaaatgtctttgaatcaaatatgatactttttatggagataaaaatgaaagaaacaccaaaagtatagca |
26206057 |
T |
|
| Q |
211 |
tggatttgttgaaaatgttactaatgtagtagagatattcctctccaaaaacttacttattcaatggtctaag |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26206056 |
tggatttgttgaaaatgttactaatgtagtagagatattcctctccaaaaacttacttattcaatggtctaag |
26205984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 26111977 - 26111713
Alignment:
| Q |
14 |
aggccaaaatgcttgtgatgaaaatccaggtgcagaaaccagtaaagattttactgctgggagtgaagttcaagaaccatcagaacagcagttgacttct |
113 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||| ||||||| |||||||||| |||| |||| | |
|
|
| T |
26111977 |
aggccacaatgctggtgatgaaaatccaagtgcagaaaccacaaaagattttgctgctgggagtgaagatcaagaagcatcagaacacaagttaacttgt |
26111878 |
T |
|
| Q |
114 |
ccacaggtcaatgccaatctattgataaaaatgtctttgaatcaaatatgatactttttatggagataaaaatgaaagaaacaccaaaagtatagcatgg |
213 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26111877 |
ccacaggtgaataccaatctattgataaaaatttctttgaatcaaatatgatacttttcatggagataaaaatgaaagaaacaccaaaagtagagcatgg |
26111778 |
T |
|
| Q |
214 |
atttgttgaaaatgttactaatgtagtagagatattcctctccaaaaacttacttattcaatggtcta |
281 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26111777 |
atttgttgaaaatgttactaat---gtagagatattcctctccaaatacttacttattcaatggtcta |
26111713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 26234273 - 26234148
Alignment:
| Q |
11 |
caaaggccaaaatgcttgtgatgaaaatccaggtgcagaaaccagtaaagattttactgctgggagtgaagttcaagaaccatcagaacagcagttgact |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||| |||||| ||||||||| |
|
|
| T |
26234273 |
caaaggccaaaatgcttgtgatgaaaatccaggtgcagaaaacagtaaagattttgctgctgggagtgaagttcaaaaagcattagaacaccagttgact |
26234174 |
T |
|
| Q |
111 |
tctccacaggtcaatgccaatctatt |
136 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
26234173 |
tctccacaggtcaataccaatctatt |
26234148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 26234148 - 26234041
Alignment:
| Q |
160 |
tatgatactttttatggagataaaaatgaaagaaacaccaaaagtatagcatggatttgttgaaaatgttactaatgtagtagagatattcctctccaaa |
259 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26234148 |
tatgatactttttatggaaataaaaatgaaagaaacaccaaaagtagagcatggatttgttgaaaatgttactaat---gtagagatattcctctccaaa |
26234052 |
T |
|
| Q |
260 |
aacttacttat |
270 |
Q |
| |
|
|||||||||| |
|
|
| T |
26234051 |
tacttacttat |
26234041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 26114397 - 26114269
Alignment:
| Q |
11 |
caaaggccaaaatgcttgtgatgaaaatccaggtgcagaaaccagtaaagattttactgctgggagtgaagttcaagaaccatcagaacagcagttgact |
110 |
Q |
| |
|
||||||| | |||| | |||||||||||||| |||||||||| | |||||||||| |||||||||||||| |||||||| |||| ||||| ||||||||| |
|
|
| T |
26114397 |
caaaggcaacaatggtggtgatgaaaatccaagtgcagaaacaactaaagattttgctgctgggagtgaaattcaagaagcatcggaacaccagttgact |
26114298 |
T |
|
| Q |
111 |
tctccacaggtcaatgccaatctattgat |
139 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
26114297 |
tctccacaggtcaacaccaatctattgat |
26114269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 26202836 - 26202739
Alignment:
| Q |
138 |
ataaaaatgtctttgaatcaaatatgatactttttatggagataaaaatgaaagaaacaccaaaagtatagcatggatttgttgaaaatgttactaat |
235 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| || |||| |||| |||| |||||||||| | | |||||| |||||| ||||||||||||| |
|
|
| T |
26202836 |
ataaaaatatctttgaatcaaatatgctacttttcgtgcagatgaaaacgaaacaaacaccaaaggccgaacatggaattgttggaaatgttactaat |
26202739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 26129917 - 26129854
Alignment:
| Q |
138 |
ataaaaatgtctttgaatcaaatatgatactttttatggagataaaaatgaaagaaacaccaaa |
201 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| || || | |||| |||| |||||||||| |
|
|
| T |
26129917 |
ataaaagtgtctttgaatcaaatatgctactttttgtgcagttgaaaacgaaacaaacaccaaa |
26129854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University