View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6473_low_28 (Length: 251)

Name: NF6473_low_28
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6473_low_28
NF6473_low_28
[»] chr7 (5 HSPs)
chr7 (1-241)||(33719134-33719375)
chr7 (24-178)||(24324533-24324685)
chr7 (47-166)||(23983420-23983538)
chr7 (102-158)||(28534284-28534340)
chr7 (138-241)||(42532930-42533034)
[»] chr4 (9 HSPs)
chr4 (27-241)||(16832691-16832906)
chr4 (50-200)||(41117680-41117829)
chr4 (29-158)||(49747724-49747853)
chr4 (50-157)||(38636990-38637095)
chr4 (27-158)||(25753368-25753499)
chr4 (110-166)||(43373854-43373910)
chr4 (28-93)||(48098530-48098596)
chr4 (165-241)||(28967208-28967285)
chr4 (135-198)||(19311080-19311144)
[»] chr1 (6 HSPs)
chr1 (40-226)||(27102400-27102577)
chr1 (50-200)||(32882584-32882736)
chr1 (43-231)||(34775082-34775272)
chr1 (41-238)||(11439694-11439893)
chr1 (40-197)||(46768390-46768542)
chr1 (54-200)||(32863258-32863406)
[»] chr8 (3 HSPs)
chr8 (50-177)||(17656472-17656600)
chr8 (50-169)||(10248311-10248430)
chr8 (50-153)||(43312399-43312502)
[»] chr3 (7 HSPs)
chr3 (102-229)||(14194200-14194328)
chr3 (139-241)||(25647990-25648093)
chr3 (104-229)||(50518772-50518898)
chr3 (101-229)||(48893036-48893165)
chr3 (138-241)||(4171050-4171154)
chr3 (138-200)||(41039463-41039526)
chr3 (101-236)||(33143628-33143763)
[»] chr2 (5 HSPs)
chr2 (24-225)||(7696155-7696355)
chr2 (44-200)||(10173291-10173449)
chr2 (50-158)||(12343037-12343143)
chr2 (101-200)||(37770362-37770461)
chr2 (143-241)||(13337561-13337660)
[»] scaffold0050 (1 HSPs)
scaffold0050 (102-241)||(36976-37117)
[»] scaffold0063 (1 HSPs)
scaffold0063 (44-174)||(58339-58470)
[»] chr5 (10 HSPs)
chr5 (41-172)||(14302185-14302317)
chr5 (101-200)||(30097601-30097702)
chr5 (100-241)||(8297739-8297880)
chr5 (113-234)||(26405226-26405348)
chr5 (41-178)||(26045698-26045836)
chr5 (135-178)||(37108102-37108145)
chr5 (109-178)||(7195036-7195105)
chr5 (119-200)||(7391711-7391792)
chr5 (119-200)||(7682840-7682922)
chr5 (102-160)||(17853825-17853883)
[»] chr6 (2 HSPs)
chr6 (40-241)||(20701468-20701674)
chr6 (112-178)||(15120337-15120404)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33719134 - 33719375
Alignment:
Q  1 ctttggtgtttcaggtccgagaatttatttttagggatgttttttctttggggtgagtagtgacgatgagtagtgttggatatcatttttaca-aggtcg 99  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33719134 ctttggtgttttaggttcgagaatttatttttaggggtgttttttctttggggtgagtagtgacgatgagtagtgttggatatcatttttacagaggtcg 33719233  T
Q  100 tttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttcggtgttccgcctata 199  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  33719234 ttttttgtgaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgagtgtttttagggtgtttactttcgatgttccgcctata 33719333  T
Q  200 tttagcaccgtttgtttgtattctcagttttaccgatctctg 241  Q
    || ||| ||||||||||||||||||||||| |||||||||||    
T  33719334 ttcagcgccgtttgtttgtattctcagtttcaccgatctctg 33719375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 24324685 - 24324533
Alignment:
Q  24 tttatttttagggatgttttttctttggggtgagtagtgacgatgagtagtgttggatatcatttttacaa-ggtcgtttttcgtaaaggagtcggtttt 122  Q
    |||||||| |||| |||||||  || ||||||||||||||||||| ||   |||||||||| || |||||| ||||||||||||| |||||||| |||||    
T  24324685 tttattttgaggggtgtttttctttaggggtgagtagtgacgatg-gt--ggttggatatcgttcttacaatggtcgtttttcgtgaaggagtctgtttt 24324589  T
Q  123 aggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgttt 178  Q
    | | |||||   ||||||||||| |||||||||||| | |||||||||| ||||||    
T  24324588 aagtggtgacgtgtattttggtgagtgttgtcctcaagggtgtttttagagtgttt 24324533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 23983420 - 23983538
Alignment:
Q  47 tttggggtgagtagtgacgatgagtagtgttggatatcatttttacaaggtcgtttttcgtaaaggagtcggttttaggcggtgataggtattttggtgg 146  Q
    ||||||||||||||||| |||| |||||  || ||||| |||||    ||| | ||||||| || ||||| |||||||| |||| |   |||||||||||    
T  23983420 tttggggtgagtagtgatgatgggtagttatgtatatcgtttttcagtggttg-ttttcgtgaatgagtctgttttaggtggtggtgtttattttggtgg 23983518  T
Q  147 gtgttgtcctcatgtgtgtt 166  Q
    ||||||||||||||||||||    
T  23983519 gtgttgtcctcatgtgtgtt 23983538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 28534340 - 28534284
Alignment:
Q  102 tttcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctca 158  Q
    |||||| || ||||| |||||||| ||||||   |||||||||||||||||||||||    
T  28534340 tttcgtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttgtcctca 28534284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 42533034 - 42532930
Alignment:
Q  138 ttttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttc-ggtgttccgcctatatttagcaccgtttgtttgtattctcagttttaccgat 236  Q
    |||| |||||||||||| ||| | | |||||||||||||||  || | ||||||||||||||||   || || |||| ||||||||||||||  |||| |    
T  42533034 tttttgtgggtgttgtcatcaagggagtttttagggtgtttatttccaggtgttccgcctatatacggcgccttttggttgtattctcagttccaccggt 42532935  T
Q  237 ctctg 241  Q
    |||||    
T  42532934 ctctg 42532930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 16832906 - 16832691
Alignment:
Q  27 atttttagggatgttttttctttggggtgagtagtgacgatgagtagtgttggatatcatttttaca-aggtcgtttttcgtaaaggagtcggttttagg 125  Q
    ||||| |||| ||||||||||||||||||||||||||||| | || |||||||||||| ||||||||  |||||||||||||  |||| |  ||||||||    
T  16832906 attttgaggggtgttttttctttggggtgagtagtgacgacgggtggtgttggatatcttttttacagcggtcgtttttcgtgcaggaatatgttttagg 16832807  T
Q  126 cggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgttt-gctttcggtgttccgcctatatttagcaccgtttgtttgtattctc 224  Q
     |||||  | |  |||||||||||||||||||| | | |||||||||||||||   ||| ||||||||||||||||  ||| || |||||||||||||||    
T  16832806 tggtga-cgtttatttggtgggtgttgtcctcaggagagtttttagggtgtttattttttggtgttccgcctatatgcagcgccttttgtttgtattctc 16832708  T
Q  225 agttttaccgatctctg 241  Q
    ||||| |||||| ||||    
T  16832707 agtttcaccgatttctg 16832691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 41117829 - 41117680
Alignment:
Q  50 ggggtgagtagtgacgatgagtagtgttggatatcatttttacaa-ggtcgtttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggt 148  Q
    |||||||||| |||||||| || ||  |||||||| ||||||||| ||| ||||| |||  | ||||| ||| |||| ||||||| ||||||||||||||    
T  41117829 ggggtgagtaatgacgatgggtggt--tggatatcgtttttacaacggttgtttt-cgtgcatgagtctgttctaggtggtgatatgtattttggtgggt 41117733  T
Q  149 gttgtcctcatgtgtgtt-tttagggtgtttgctttc-ggtgttccgcctatat 200  Q
    |||||||||||| ||||| ||||||||||||  |||| ||||||||||||||||    
T  41117732 gttgtcctcatg-gtgttatttagggtgtttattttcgggtgttccgcctatat 41117680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 49747724 - 49747853
Alignment:
Q  29 ttttagggatgttttttcttt-ggggtgagtagtgacgatgagtagtgttggatatcatttttacaa-ggtcgtttttcgtaaaggagtcggttttaggc 126  Q
    |||||| || ||| ||||||| ||||||||||||||| ||| |  ||||||||| || ||||||||| ||||||||| ||| || ||||| ||||||||     
T  49747724 ttttagagaggttgtttctttaggggtgagtagtgacaatgggcggtgttggat-tcgtttttacaatggtcgtttt-cgtgaaagagtctgttttaggt 49747821  T
Q  127 ggtgataggtattttggtgggtgttgtcctca 158  Q
    ||||| | | ||||||||||||||||||||||    
T  49747822 ggtgacatgaattttggtgggtgttgtcctca 49747853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 38637095 - 38636990
Alignment:
Q  50 ggggtgagtagtgacgatgagtagtgttggatatcatttttaca-aggtcgtttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggt 148  Q
    ||||||||||||||||||| || ||  |||||||||||||||||  ||| | ||||||| |||||||  |||||||| ||||| | ||||||| ||||||    
T  38637095 ggggtgagtagtgacgatgggtggt--tggatatcatttttacagcggttg-ttttcgtgaaggagtttgttttaggtggtgacatgtattttcgtgggt 38636999  T
Q  149 gttgtcctc 157  Q
    |||||||||    
T  38636998 gttgtcctc 38636990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 25753368 - 25753499
Alignment:
Q  27 atttttagggatgttttttctttggggtgagtagtgacgatgagtagtgttggatatcatttttacaaggtcgtttttcgtaaaggagtcggttttaggc 126  Q
    ||||| |||| |||||||  || |||||||||||||||||||| |  ||||||||| |  |||||||  | |  ||||||| |||||||  ||||||||     
T  25753368 attttgaggggtgtttttctttgggggtgagtagtgacgatgaatgatgttggataccgattttacagtggcccttttcgtgaaggagtttgttttaggt 25753467  T
Q  127 ggtgataggtattttggtgggtgttgtcctca 158  Q
    | |||   ||||||||||||||||||||||||    
T  25753468 gatgacttgtattttggtgggtgttgtcctca 25753499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 43373910 - 43373854
Alignment:
Q  110 aggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtt 166  Q
    ||||||| |||||||| ||||||   ||||||||||||||||||||| |||||||||    
T  43373910 aggagtcagttttagggggtgatgtttattttggtgggtgttgtccttatgtgtgtt 43373854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 48098530 - 48098596
Alignment:
Q  28 tttttagggatgttttttctttgggg-tgagtagtgacgatgagtagtgttggatatcatttttaca 93  Q
    ||||||||| ||| |||||||||||| ||||||||||||| | || ||| |||||||| ||||||||    
T  48098530 tttttaggggtgtattttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttaca 48098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 28967208 - 28967285
Alignment:
Q  165 tttttagggtgtttgctttc-ggtgttccgcctatatttagcaccgtttgtttgtattctcagttttaccgatctctg 241  Q
    ||||||||||||||  |||| ||||||||||||||||  ||| || || ||||||||| || |||| |||||||||||    
T  28967208 tttttagggtgtttattttcaggtgttccgcctatatacagcgcctttcgtttgtattatctgtttcaccgatctctg 28967285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 19311144 - 19311080
Alignment:
Q  135 gtattttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttcgg-tgttccgcctat 198  Q
    ||||||||||||||||| ||| || | | |||||||||||||||  |||||| ||||||||||||    
T  19311144 gtattttggtgggtgttatccccaggggagtttttagggtgtttaatttcggatgttccgcctat 19311080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 27102400 - 27102577
Alignment:
Q  40 ttttttctttggggtgagtagtgacgatgagtagtgttggatatcatttttacaaggtcgtttttcgtaaaggagtcggttttaggcggtgataggtatt 139  Q
    |||||||||||||||||||||||||||||||| ||||||||| || ||||||||  | |  ||||||| || |  || |||||||| |         |||    
T  27102400 ttttttctttggggtgagtagtgacgatgagtggtgttggatttcgtttttacagtggctgttttcgtgaaagtatctgttttagggg---------att 27102490  T
Q  140 ttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttcgg-tgttccgcctatatttagcaccgtttgtttgtattctcag 226  Q
    ||||||||||||||||||||| |||||||||||||||||  |||||| ||||||||||||||   ||||| |||||||||||||||||    
T  27102491 ttggtgggtgttgtcctcatg-gtgtttttagggtgtttattttcgggtgttccgcctatatacggcaccttttgtttgtattctcag 27102577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 32882584 - 32882736
Alignment:
Q  50 ggggtgagtagtgacgatgagtagtgttggatatcatttttaca-aggtcgtttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggt 148  Q
    ||||||||||||||||||| || |||||||||||| | ||||||  | ||| ||||||| |||||||| |||||||||||||||   |||||||||||||    
T  32882584 ggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcg-ttttcgtgaaggagtcagttttaggcggtgatgtatattttggtgggt 32882682  T
Q  149 gttgtcctcatgtgtgt-ttttagggtgtttgctttc-ggtgttccgcctatat 200  Q
    |||||||||  | |||| |||||||||||||  |||| ||||||| ||||||||    
T  32882683 gttgtcctcgggggtgtcttttagggtgtttattttcgggtgttctgcctatat 32882736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 34775082 - 34775272
Alignment:
Q  43 tttctttggggtgagtagtgacgatgagtagtgttggatatcatttttaca-aggtcgtttttcgtaaaggagtcggttttaggcggtgataggtatttt 141  Q
    |||| ||||||||||||||||||| | ||||||| |||| || ||||||||   |||| ||||||| |||||||| |||||||| | |||   |||||||    
T  34775082 tttcattggggtgagtagtgacgacgggtagtgtgggatttcgtttttacagttgtcg-ttttcgtgaaggagtctgttttaggtgatgacgtgtatttt 34775180  T
Q  142 ggtgggtgttgtcctcatgtgt-gtttttagggtgtttgctttc-ggtgttccgcctatatttagcaccgtttgtttgtattctcagtttta 231  Q
    ||||||||||||||||||  ||  |||||| |||||||  |||| ||||||||||||||||   || || || |||||||||||||| ||||    
T  34775181 ggtgggtgttgtcctcattggtattttttaaggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattctcagcttta 34775272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 11439893 - 11439694
Alignment:
Q  41 tttttctttggggt--gagtagtgacgatgagtagtgttggatatcatttttacaaggtcgtt--tttcgtaaaggagtcggttttaggcggtgataggt 136  Q
    |||||||||||||   ||||||||||||| ||| ||||||||||||||||||||  ||| |||  |||||| ||||  || |||||||| |||||   ||    
T  11439893 tttttctttgggggtggagtagtgacgataagtggtgttggatatcatttttac--ggtggttgctttcgtgaagggatctgttttaggtggtgacgtgt 11439796  T
Q  137 attttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttcgg-tgttccgcctatatttagcaccgtttgtttgtattctcagttttaccga 235  Q
    |||||||||| ||||||| ||| | | | |||||||||||||  |||||| ||||||| |||||| |  | || |||||||||||||||| ||| |||||    
T  11439795 attttggtggatgttgtcttca-gggggattttagggtgtttattttcggatgttccgtctatatatgtcgccttttgtttgtattctcattttcaccga 11439697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 46768390 - 46768542
Alignment:
Q  40 ttttttctttgggg-tgagtagtgacgatgagtagtgttggatatcatttttacaaggtcgtttttcgtaaaggagtcggttttaggcggtgataggtat 138  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||  |       ||||||||| ||| |||||||| |||||||| |||||   | ||    
T  46768390 ttttttctttgggggtgagtagtgacgatgggcagtgttggatatcggt-------ggtcgtttt-cgtgaaggagtctgttttaggtggtgacgtgaat 46768481  T
Q  139 tttggtgggtgttgtcctcatgtgtg-tttttagggtgtttgctttc-ggtgttccgccta 197  Q
    |||||||||||||||||||  | ||| ||||||||||||||  |||| |||||||||||||    
T  46768482 tttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgccta 46768542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 32863406 - 32863258
Alignment:
Q  54 tgagtagtgacgatgagtagtgttggatatcatttttacaa-ggtcgtttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttg 152  Q
    ||||| |||||||||||| |||   |||||| | ||||||| ||||||||| |||  |||| || ||||||||||||||   |||| |||||||||||||    
T  32863406 tgagttgtgacgatgagtggtgcgagatatcgtgtttacaatggtcgtttt-cgtggaggattctgttttaggcggtgacgtgtatgttggtgggtgttg 32863308  T
Q  153 tcctcatgtgtgttttt-agggtgtttgctttc-ggtgttccgcctatat 200  Q
    ||||| || ||||||||   |||||||  |||| ||||||||||||||||    
T  32863307 tcctcttgggtgtttttcttggtgtttattttcaggtgttccgcctatat 32863258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 17656600 - 17656472
Alignment:
Q  50 ggggtgagtagtgacgatgagtagtgttggatatcatttttacaa-ggtcgtttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggt 148  Q
    ||||||||||||||| |||||  |||||||||||| ||||| ||  ||||||||||| | |||||||| |||||||  |||||   | ||||||||||||    
T  17656600 ggggtgagtagtgacaatgagcggtgttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtgacgtgaattttggtgggt 17656501  T
Q  149 gttgtcctcatgtgtgtttttagggtgtt 177  Q
    |||||||||| | ||||||||||||||||    
T  17656500 gttgtcctcaagggtgtttttagggtgtt 17656472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 10248430 - 10248311
Alignment:
Q  50 ggggtgagtagtgacgatgagtagtgttggatatcatttttacaa-ggtcgtttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggt 148  Q
    ||||||||||||||||||| ||  ||| |||| || ||||||||  ||||||||| ||| |||||||  |||||||| |||||   ||||||||| ||||    
T  10248430 ggggtgagtagtgacgatgggtgttgtgggatgtcgtttttacagtggtcgtttt-cgtgaaggagtttgttttaggtggtgacgtgtattttggcgggt 10248332  T
Q  149 gttgtcctcatgtgtgttttt 169  Q
    |||||||||| | ||||||||    
T  10248331 gttgtcctcaagggtgttttt 10248311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 43312502 - 43312399
Alignment:
Q  50 ggggtgagtagtgacgatgagtagtgttggatatcatttttaca-aggtcgtttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggt 148  Q
    |||| ||||||||||||||  | |||| ||||||| ||||||||  |||||||||| ||  ||||||| | |||||| ||||| | |||||||| |||||    
T  43312502 ggggcgagtagtgacgatgtatggtgtgggatatcgtttttacagtggtcgttttt-gtgtaggagtctgatttaggtggtgacatgtattttgatgggt 43312404  T
Q  149 gttgt 153  Q
    |||||    
T  43312403 gttgt 43312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 14194200 - 14194328
Alignment:
Q  102 tttcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttcgg-tgttccgcctatat 200  Q
    |||||| | |||||| |||||||| |||||   |||||||||||||||| ||||||||| ||||||||||| |||||  |||||| ||||||||||||||    
T  14194200 tttcgtgatggagtctgttttaggtggtgacgtgtattttggtgggtgtggtcctcatgagtgtttttaggatgtttattttcggatgttccgcctatat 14194299  T
Q  201 ttagcaccgtttgtttgtattctcagttt 229  Q
       ||||| ||||||||| ||||||||||    
T  14194300 aaggcaccttttgtttgtgttctcagttt 14194328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 25647990 - 25648093
Alignment:
Q  139 tttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttc-ggtgttccgcctatatttagcaccgtttgtttgtattctcagttttaccgatc 237  Q
    |||||||||||| |||||||||||||||||||||||||||  |||| ||||||||| ||||||   || || |||||||||||||| ||||| |||||||    
T  25647990 tttggtgggtgtggtcctcatgtgtgtttttagggtgtttattttcgggtgttccgtctatatactgcgccttttgtttgtattcttagtttcaccgatc 25648089  T
Q  238 tctg 241  Q
    ||||    
T  25648090 tctg 25648093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 50518898 - 50518772
Alignment:
Q  104 tcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttc-ggtgttccgcctatattt 202  Q
    |||| |||||||| |||||||  |||||   |||||||| ||||||| ||||||||| |||||||||||||||||  |||| ||||||||||||||||      
T  50518898 tcgtgaaggagtctgttttagatggtgaggtgtattttgttgggtgtggtcctcatgggtgtttttagggtgtttattttcgggtgttccgcctatatac 50518799  T
Q  203 agcaccgtttgtttgtattctcagttt 229  Q
      |||| ||||||||||||||||||||    
T  50518798 gacaccttttgtttgtattctcagttt 50518772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 48893165 - 48893036
Alignment:
Q  101 ttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttcgg-tgttccgcctata 199  Q
    |||| |||||||||||  ||||||| ||||| | |||||||||||||||||||| ||| | |||||||||  ||||||  |||||| |||||| | ||||    
T  48893165 tttttgtaaaggagtctcttttaggtggtgacatgtattttggtgggtgttgtcttcaggggtgtttttaaagtgtttattttcggatgttcctcttata 48893066  T
Q  200 tttagcaccgtttgtttgtattctcagttt 229  Q
    |   ||| ||||||||||||||||||||||    
T  48893065 tacggcatcgtttgtttgtattctcagttt 48893036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 4171050 - 4171154
Alignment:
Q  138 ttttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttc-ggtgttccgcctatatttagcaccgtttgtttgtattctcagttttaccgat 236  Q
    |||| ||||||||||||||||    ||||||||||||||||  |||| ||||||||||||||||    | || |||||||||||||||||||| |||| |    
T  4171050 tttttgtgggtgttgtcctcaatgatgtttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggt 4171149  T
Q  237 ctctg 241  Q
    |||||    
T  4171150 ctctg 4171154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 41039463 - 41039526
Alignment:
Q  138 ttttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttc-ggtgttccgcctatat 200  Q
    ||||||||||||||||| ||| | |||||||||||||||||  |||| ||||||||||||||||    
T  41039463 ttttggtgggtgttgtcttcacgggtgtttttagggtgtttattttctggtgttccgcctatat 41039526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 33143763 - 33143628
Alignment:
Q  101 ttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttcggtgttccgcctatat 200  Q
    ||||||| |||||||  |||||||| |||||   || || |||||| |||| ||||| || | |||||| ||||||||  ||  ||||||||||||||||    
T  33143763 ttttcgtgaaggagtttgttttaggtggtgacgtgttttatggtggatgttatcctcttgggagttttttgggtgtttttttcgggtgttccgcctatat 33143664  T
Q  201 ttagcaccgtttgtttgtattctcagttttaccgat 236  Q
     |  | || |||| ||||||||||||||| ||||||    
T  33143663 atgacgccttttggttgtattctcagtttcaccgat 33143628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 7696155 - 7696355
Alignment:
Q  24 tttatttttagggatgttttttctttggg-gtgagtagtgacgatgagtagtgttggatatcatttttacaa-ggtcgtttttcgtaaaggagtcggttt 121  Q
    ||||||||||||| ||||||| ||  ||| ||||||||||||||||||| ||  || ||||||||||||||  ||||||||| ||| |||||||   |||    
T  7696155 tttatttttaggggtgttttt-ctaagggagtgagtagtgacgatgagtggt--tgaatatcatttttacattggtcgtttt-cgtgaaggagtttattt 7696250  T
Q  122 taggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgttt-gctttcggtgttccgcctatatttagcaccgtttgtttgtat 220  Q
    |||| ||||||  |||||||||||||||||||||||  | ||||||||| |||||||   ||| ||||||||||||||||   |  || |||||||||||    
T  7696251 taggtggtgatgtgtattttggtgggtgttgtcctcgggggtgtttttaaggtgtttatttttgggtgttccgcctatatacggttccttttgtttgtat 7696350  T
Q  221 tctca 225  Q
    |||||    
T  7696351 tctca 7696355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 10173449 - 10173291
Alignment:
Q  44 ttctttggggtgagtagtgacgatgagtagtgttggatatcatttttaca-aggtcgtttttcgtaaaggagtcggttttaggcggtgataggtattttg 142  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||||||   |||| ||||| | |||  ||| ||||||||| |||| | ||||||||    
T  10173449 ttctttggggtgagtagtgacgatgagtggtgttgtatatcgtttttacagtagtcg-ttttcatgaagacgtctgttttaggccgtgacatgtattttg 10173351  T
Q  143 gtgggtgttgtcctcatgtgtgt-ttttagggtgtttgctttc-ggtgttccgcctatat 200  Q
     ||||| |||||||||   || | |||||||||||||  |||| ||||||||||||||||    
T  10173350 atgggtattgtcctcagaggtatcttttagggtgtttattttcaggtgttccgcctatat 10173291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 12343037 - 12343143
Alignment:
Q  50 ggggtgagtagtgacgatgagtagtgttggatatcatttttaca-aggtcgtttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggt 148  Q
    |||||||||||||||||||||| ||  |||||||| |||||||| |||||||||| ||| |||||||| |||||||| |||||   |||||||| ||| |    
T  12343037 ggggtgagtagtgacgatgagtggt--tggatatcgtttttacagaggtcgtttt-cgtgaaggagtctgttttaggtggtgacgtgtattttgatggat 12343133  T
Q  149 gttgtcctca 158  Q
    ||||||||||    
T  12343134 gttgtcctca 12343143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 37770461 - 37770362
Alignment:
Q  101 ttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttc-ggtgttccgcctata 199  Q
    ||||||| |||||||| |||||||| |||||   | ||||||||||||| | |||||||| |||||||||||||||||  |||| |||||||||||||||    
T  37770461 ttttcgtgaaggagtctgttttaggtggtgacgtggattttggtgggtggtatcctcatg-gtgtttttagggtgtttattttcgggtgttccgcctata 37770363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 13337561 - 13337660
Alignment:
Q  143 gtgggtgttgtcctcatgtgtgtttttagggtgtttgctttc-ggtgttccgcctatatttagcaccgtttgtttgtattctcagttttaccgatctctg 241  Q
    |||||||||||||||| | |||||||||||||||||  |||| |||||||| |||||||    | || ||||||||||||||| |||| |||| ||||||    
T  13337561 gtgggtgttgtcctcaggggtgtttttagggtgtttattttcaggtgttccacctatatacgacgccttttgtttgtattctctgtttcaccggtctctg 13337660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 241
Target Start/End: Original strand, 36976 - 37117
Alignment:
Q  102 tttcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgttttt-agggtgtttgctttcgg-tgttccgcctata 199  Q
    |||||| |||||||| |||||||| |||||   |||||||| ||||||| ||||||||| |||||||| | |||||||  |||||| |||||||||||||    
T  36976 tttcgtgaaggagtctgttttaggtggtgacgtgtattttgttgggtgtggtcctcatgggtgttttttatggtgtttattttcggatgttccgcctata 37075  T
Q  200 tttagcaccgtttgtttgtattctcagttttaccgatctctg 241  Q
    |  |||  | |||||||||||| ||||||| |||| ||||||    
T  37076 tacagcgtcttttgtttgtattatcagtttcaccggtctctg 37117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 58339 - 58470
Alignment:
Q  44 ttctttggg-gtgagtagtgacgatgagtagtgttggatatcatttttacaa-ggtcgtttttcgtaaaggagtcggttttaggcggtgataggtatttt 141  Q
    ||||||||| |||||||||||||| | |||||||||||||||| |||||||| ||||| ||||||| |||||||| ||||| || ||||||  ||| |||    
T  58339 ttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcg-ttttcgtgaaggagtctgtttttggtggtgatgtgtacttt 58437  T
Q  142 ggtgggtgttgtcctcatgtgtgtttttagggt 174  Q
    ||  | || ||| |||||| |||||||||||||    
T  58438 ggctgatggtgttctcatgggtgtttttagggt 58470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 14302317 - 14302185
Alignment:
Q  41 tttttctttgggg-tgagtagtgacgatgagtagtgttggatatcatttttacaa-ggtcgtttttcgtaaaggagtcggttttaggcggtgataggtat 138  Q
    ||||||||||||| |||||||||||||   || |||||||||||| ||||||||  ||||||||| ||  ||||| || |||||||| |||||   ||||    
T  14302317 tttttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgtttt-cgcgaaggaatctgttttaggtggtgacgtgtat 14302219  T
Q  139 tttggtgggtgttgtcctcatgtgtgtttttagg 172  Q
    |||||||||||||||| ||| | |||||||||||    
T  14302218 tttggtgggtgttgtcatcaggggtgtttttagg 14302185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 30097601 - 30097702
Alignment:
Q  101 ttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtg-tttttagggtgtttgctttc-ggtgttccgcctat 198  Q
    ||||||| |||||||| |||||||| |||||   |||||||||||||||||||| |||||  || ||||||||||||||  |||| ||||||||||||||    
T  30097601 ttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtcatcatggatgttttttagggtgtttattttcgggtgttccgcctat 30097700  T
Q  199 at 200  Q
    ||    
T  30097701 at 30097702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 241
Target Start/End: Original strand, 8297739 - 8297880
Alignment:
Q  100 tttttcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttc-ggtgttccgcctat 198  Q
    |||||| | |||||||  |||||||| ||||||  |||||||||||| |||| |||||| | ||||||||||||||| |  |||| ||||||||||||||    
T  8297739 tttttcttgaaggagtgtgttttaggtggtgatgtgtattttggtggatgttatcctcaggggtgtttttagggtgtgtattttcaggtgttccgcctat 8297838  T
Q  199 atttagcaccgtttgtttgtattctcagttttaccgatctctg 241  Q
     |  | | || ||| |||||||||||||||| |||| ||||||    
T  8297839 gtacaacgcc-tttttttgtattctcagtttcaccggtctctg 8297880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 26405348 - 26405226
Alignment:
Q  113 agtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttc-ggtgttccgcctatatttagcaccgtt 211  Q
    |||| |||||||| |||||   |||||||||||| ||||||||||| | ||||||||| |||||||  |||| ||||||||| ||||||    | || ||    
T  26405348 agtctgttttaggtggtgacgtgtattttggtggttgttgtcctcaggggtgtttttaaggtgtttattttcgggtgttccgactatatacgacgccttt 26405249  T
Q  212 tgtttgtattctcagttttaccg 234  Q
    |||||||||||||||||| ||||    
T  26405248 tgtttgtattctcagtttcaccg 26405226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 178
Target Start/End: Complemental strand, 26045836 - 26045698
Alignment:
Q  41 tttttctttggggtgagtagtgacgatgagtagtgttggatatcattttta-caaggtcgtttttcgtaaaggagtcggttttaggcggtgataggtatt 139  Q
    |||||||||||||||||||||||||||| |  ||||||||| || |||||| |  ||||  ||||| | ||| |||| |||||||| |||||   | |||    
T  26045836 tttttctttggggtgagtagtgacgatgggaggtgttggatttcgtttttaccgtggtc-attttcatgaagaagtctgttttaggtggtgacgtgaatt 26045738  T
Q  140 ttggtgggtgttgtcctcatgtgtg-tttttagggtgttt 178  Q
    ||||||||||||||||||| | | | ||||||||||||||    
T  26045737 ttggtgggtgttgtcctcaggggcgttttttagggtgttt 26045698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 37108102 - 37108145
Alignment:
Q  135 gtattttggtgggtgttgtcctcatgtgtgtttttagggtgttt 178  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  37108102 gtattttggtgggtgttatcctcatgggtgtttttagggtgttt 37108145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 7195105 - 7195036
Alignment:
Q  109 aaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgttt 178  Q
    |||||||| |||||||| |||||   ||||||||||||||||||||| ||   |||||||||||||||||    
T  7195105 aaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtccgcagcggtgtttttagggtgttt 7195036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 7391792 - 7391711
Alignment:
Q  119 ttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttc-ggtgttccgcctatat 200  Q
    ||||||| ||||| | |||||||| ||| ||||||||||||| ||||||||||| ||| | ||||| ||| ||||||||||||    
T  7391792 ttttaggtggtgacatgtattttgatgg-tgttgtcctcatgggtgtttttaggttgtgtactttcaggttttccgcctatat 7391711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 7682840 - 7682922
Alignment:
Q  119 ttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttcgg-tgttccgcctatat 200  Q
    ||||||| ||||||  ||||||||||||||||||| |||||  || ||||| ||||| ||  |||||| ||||||||||||||    
T  7682840 ttttaggtggtgatgtgtattttggtgggtgttgttctcataagtattttttgggtgcttattttcggatgttccgcctatat 7682922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 17853883 - 17853825
Alignment:
Q  102 tttcgtaaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatg 160  Q
    ||||||||||||||| |||||||  ||||||   |||||||||||||||| ||||||||    
T  17853883 tttcgtaaaggagtctgttttagaaggtgatgtttattttggtgggtgttttcctcatg 17853825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 20701674 - 20701468
Alignment:
Q  40 ttttttctttggggtgagtagtgacgatgagtagtgttggatatcatttttacaaggtcgtt--tttcgtaaaggagtcggttttaggcggtgataggta 137  Q
    |||||| || ||||||||||||||||||| ||||| ||||||||| ||||||||  || |||  |||||| || | ||| ||| |||| |||||   ||     
T  20701674 tttttttttgggggtgagtagtgacgatgggtagtattggatatcgtttttaca--gtggttgctttcgtgaatgggtctgttataggtggtgaagtgtt 20701577  T
Q  138 t-----tttggtgggtgttgtcctcatgtgtgtttttagggtgtttgctttc-ggtgttccgcctatatttagcaccgtttgtttgtattctcagtttta 231  Q
    |     |||| |||||||||||||| || ||| |||||| ||||||  || | ||||||||||||||||  ||| || |||||||||||||||||||| |    
T  20701576 ttagggtttgatgggtgttgtcctcgtgggtg-ttttagtgtgtttatttccaggtgttccgcctatatacagcgccttttgtttgtattctcagtttca 20701478  T
Q  232 ccgatctctg 241  Q
    ||||||||||    
T  20701477 ccgatctctg 20701468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 15120404 - 15120337
Alignment:
Q  112 gagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgtgtg-tttttagggtgttt 178  Q
    ||||| |||||||| ||||||  |||||||||||| |||||||||||||  || ||||||||||||||    
T  15120404 gagtctgttttaggtggtgatgtgtattttggtggatgttgtcctcatggatgttttttagggtgttt 15120337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University