View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_low_3 (Length: 476)
Name: NF6473_low_3
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 1837254 - 1836788
Alignment:
| Q |
1 |
ttaatcgcttgaatttgacttggagagagtctgaccctcagaggcgccaccgcatcagtggaactggctgagc---ctgttccactgttgttatctggtg |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
1837254 |
ttaatcgcttgaatttgacttggagagagtctgaccctcagaggcgccaccgcatcagtggaactggctgagcagcctgttccactgttgttatctagtg |
1837155 |
T |
|
| Q |
98 |
gcgccaacatgttgg------ctctcaacctcaaggcggcttcatgtgctgccattcgaatgtggtcagcattgttgcttagaggacgaggaagagtgtt |
191 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1837154 |
gcgccaacatgttggtgttggctctcaacctcaaggcggcttcatgtgctgccattcgaatgtggtcagcattgttgcttagaggacgaggaagagtgtt |
1837055 |
T |
|
| Q |
192 |
tgcaagttccgggaaattgagcctggcttcacgtcccctgaaatgcaaggcagctacgtcgtatgcagccgctgccatctctggtgtctcgaaacttcct |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1837054 |
tgcaagttccgggaaattgagcctggcttcacgtcccctgaaatgcaaggcagctacgtcgtatgcagccgctgccatctctggtgtctcgaaacttcct |
1836955 |
T |
|
| Q |
292 |
aaccagattcttgttttggtgccgggctcacgaatttcggaaacccatttaccccattttctcttacggactcctctgtatgcagaactagcagcaccac |
391 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836954 |
aaccagattcttgttttggtgccgggctcgcgaatttcggaaacccatttaccccattttctcttacggactcctctgtatgcagaactagcagcaccac |
1836855 |
T |
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| Q |
392 |
ttgaagacattgttcatgcaaattaagtatagtttttatcgaaatataattatgtccatgttagttg |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
1836854 |
ttgaagacattgttcatgcaaattaagtatagtttttatcgaaatatatttatgtcaatgttagttg |
1836788 |
T |
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