View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_low_30 (Length: 241)
Name: NF6473_low_30
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_30 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 8696207 - 8696396
Alignment:
| Q |
3 |
ttagttagctttcagattttgtatattacaaagtaaattagt---atctgaaaaagtgtattctgggaagtgtttcccctacaatacaagagaaattact |
99 |
Q |
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| T |
8696207 |
ttagttagctttcagattttgtatattacaaagtaaagtagtagtatctgaaaaagtgtattctgggaagtgtttcccctacaatacaagagaaattact |
8696306 |
T |
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| Q |
100 |
gaccaattattcttctagtgtatcttactatatatttactcgggtcaacaaaaattaatctgtctgatccaagttttaaacatcatacatcaatttttgt |
199 |
Q |
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| T |
8696307 |
gaccaattattcttctagtgtatcttactat---------------aacaaaaattaatctgtctgatccaagttttaaacatcatacatcaatttttgt |
8696391 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 8696415 - 8696453
Alignment:
| Q |
200 |
tacgtagaaccataattattcttctagtctctctctgct |
238 |
Q |
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| T |
8696415 |
tacgtagaaccataattattcttctagtctctctctgct |
8696453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 312752 - 312810
Alignment:
| Q |
142 |
ggtcaacaaaaattaatctgtctgatccaagttttaaacatcatacatcaatttttgtt |
200 |
Q |
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| T |
312752 |
ggtcaacaaaagttaatgtatctgatccaaattttaaactagatacatcaatttttgtt |
312810 |
T |
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