View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_low_33 (Length: 238)
Name: NF6473_low_33
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 31229506 - 31229286
Alignment:
| Q |
3 |
ttatatccaatttgagtcttcgtcgcagtatttataagtttgttttgtatacggttctttaaaaatcatattcaattttcacaaaatgccacctttgaag |
102 |
Q |
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| T |
31229506 |
ttatatccaatttgagtcttcgtcgcagtatttataagtttgttttgtatacggttctttaaaaatcatattcaattttcacaaaatgccacctttgaag |
31229407 |
T |
|
| Q |
103 |
agatatacaattttcacttccaattatttaatgaaatcttctatattattttccaagaaggtatccaaataaagtgtcatccatgcttgctaaatatttt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31229406 |
agatatacaattttcacttccaattatttaatgaaatcttctatattattttccaagaaggtatccaaataaagtgtcatccatgcttgctaaatatttt |
31229307 |
T |
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| Q |
203 |
aattttagtcaaactagaatt |
223 |
Q |
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|||||| |||||||||||||| |
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| T |
31229306 |
aatttttgtcaaactagaatt |
31229286 |
T |
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