View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_low_35 (Length: 228)
Name: NF6473_low_35
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_35 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 55823891 - 55824113
Alignment:
| Q |
6 |
acaatccgtgattcacaactcattggattgtccggctatacaagagaggtgctcattcttaatcataatctttatcacatctttgccgtgccttactcga |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55823891 |
acaatccgtgattcacaactcattggattgtccggctatacaagagaggtgctcattcttaatcataatctttatcacatctttgccgtgccttactcga |
55823990 |
T |
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| Q |
106 |
agcgtttgctttttgacatcaattgaaatgttatgacttagtagttaattggtttatatccttcatttttctttccttttcagggtcttcctgtctttgc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55823991 |
agcgtttgctttttgacatcaattgaaatgttatgacttagtagttaattggtttatatccttcatttttctttccttttcagggtcttcctgtctttgc |
55824090 |
T |
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| Q |
206 |
aattggtgttgggcttagcacat |
228 |
Q |
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||||||||||||||||||||||| |
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| T |
55824091 |
aattggtgttgggcttagcacat |
55824113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 56153559 - 56153337
Alignment:
| Q |
6 |
acaatccgtgattcacaactcattggattgtccggctatacaagagaggtgctcattcttaatcataatctttatcacatctttgccgtgccttactcga |
105 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
56153559 |
acaatacgtgattcacaactcattggattgtccggctatacaagagaggtgctcattcttaatcataatctttatcacatctttgtcgtgccttactcga |
56153460 |
T |
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| Q |
106 |
agcgtttgctttttgacatcaattgaaatgttatgacttagtagttaattggtttatatccttcatttttctttccttttcagggtcttcctgtctttgc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
56153459 |
agcgtttgctttttgacatcaattgaaatgttatgacttagtagttaattggtttatatccttcatttttctttcctttttagggtcttcctgtctttgc |
56153360 |
T |
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| Q |
206 |
aattggtgttgggcttagcacat |
228 |
Q |
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| T |
56153359 |
aattggtgttgggcttagcacat |
56153337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 9888672 - 9888629
Alignment:
| Q |
185 |
tcagggtcttcctgtctttgcaattggtgttgggcttagcacat |
228 |
Q |
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|||||| || |||||||||||||| ||||||||||||||||||| |
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| T |
9888672 |
tcagggcctgcctgtctttgcaatcggtgttgggcttagcacat |
9888629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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