View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_low_36 (Length: 218)
Name: NF6473_low_36
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_36 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 17800518 - 17800406
Alignment:
| Q |
106 |
tgcagcaaacgtgaatccaaatcatgccaaattaatcatggccattcttctaatcagtgaggccatcatgagtaatcgtaatatgaacacagcttttatt |
205 |
Q |
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| T |
17800518 |
tgcagcaaacgtgattccaaatcatgccaaattaatcatggccattcttctaatcagtgaggccatcatgtgtaatcgaaatatgaacaaagcttttatt |
17800419 |
T |
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| Q |
206 |
tgtgaagatatac |
218 |
Q |
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| T |
17800418 |
tgtgaagatatac |
17800406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 17800657 - 17800557
Alignment:
| Q |
10 |
aatgagagtgatattttatattttatgaagaaaaaatgtaggtacatggttggcattagcttggtttgtcagtacatagtgaatgaatacatctgatgca |
109 |
Q |
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| T |
17800657 |
aatgaaagtgatattttatattttatgaagaaaaaatgtaggtacatggttggcattagcttggtttgtcagtacatagtgaatgaatacatctgatgca |
17800558 |
T |
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| Q |
110 |
g |
110 |
Q |
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| T |
17800557 |
g |
17800557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 17789756 - 17789651
Alignment:
| Q |
106 |
tgcagcaaacgtgaatccaaatcatgccaaattaatcatggccattcttctaatcagtgaggccatcatgagtaatcgtaatatgaacacagcttttatt |
205 |
Q |
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| T |
17789756 |
tgcagcaaacgtgattccaaatcatgccaaataaatcatggccattcttgtaatcagtgaggccatcatgtgtaatcaaaatatgcacaaagcttttatt |
17789657 |
T |
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| Q |
206 |
tgtgaa |
211 |
Q |
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|||||| |
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| T |
17789656 |
tgtgaa |
17789651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 17789846 - 17789818
Alignment:
| Q |
42 |
aaaatgtaggtacatggttggcattagct |
70 |
Q |
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| T |
17789846 |
aaaatgtaggtacatggttggcattagct |
17789818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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