View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_low_5 (Length: 440)
Name: NF6473_low_5
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 146 - 406
Target Start/End: Original strand, 8431974 - 8432234
Alignment:
| Q |
146 |
aatttccatgttagaaagtagctgtgtttacaagttaatgcaacatagatcaagtcatgtaatatttagctaggcaagcttaatttaatttacattcgag |
245 |
Q |
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| T |
8431974 |
aatttccatgttagaaagtagctgtgtttacaagttaatgcaacatatatcaattcatgtaatatttagctaggcaagcttaatttaatttacattcgag |
8432073 |
T |
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| Q |
246 |
tatttttccttatttaagtaattgaagaagnnnnnnnctgccaatgatatagtattgattttcctacatcatagatcatatttgctgcattttgttcagt |
345 |
Q |
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| T |
8432074 |
tatttttccttatttaagtaattgaagaagaaaaaaactaccaatgatatagtattgattttcctacatcatagatcatatttgctgcattttgtttagt |
8432173 |
T |
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| Q |
346 |
tttccttaatttttatcctactacaatgaaagcttcacataaatccattaggtggaagtga |
406 |
Q |
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| T |
8432174 |
tttccttaatttttatcctactacaatgaaagtttcacataaatccattaggtggaagtga |
8432234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 8431313 - 8431362
Alignment:
| Q |
8 |
gagcagagattgacatcatacatcgattaaggtaaatatgcatgcaactt |
57 |
Q |
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| T |
8431313 |
gagcagagattgacatcatacatcgattaaggtaaatatgcatgcaactt |
8431362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 8437594 - 8437663
Alignment:
| Q |
205 |
taatatttagctaggcaagcttaatttaatttacattcgagtatttttccttatttaagtaattgaagaa |
274 |
Q |
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| T |
8437594 |
taatatttggctaggcaagcttagtttaattaacattcaagtatttttccttgtttaagtaattgaagaa |
8437663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 8440819 - 8440888
Alignment:
| Q |
205 |
taatatttagctaggcaagcttaatttaatttacattcgagtatttttccttatttaagtaattgaagaa |
274 |
Q |
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|||||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||| |
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| T |
8440819 |
taatatttggctaggcaagcttagtttaattaacattcaagtatttttccttgtttaagtaattgaagaa |
8440888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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