View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6473_low_7 (Length: 394)
Name: NF6473_low_7
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 1249205 - 1248831
Alignment:
| Q |
5 |
taggagcacagagctggttgtggcttacatctaggcctacaagcttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaag |
104 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1249205 |
taggaccacaaagctggttgtggctcacatctaggcctacaagcttaggaaggcggccgaggtaagccggaacccgaccggttaaatggttgttattaag |
1249106 |
T |
|
| Q |
105 |
ccctaaagtggctaaattggtgagcttgctaaagtaatcggggataggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1249105 |
ccctaaagtggctaaattggtgagcttgctaaagtaatcagggataggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttc |
1249006 |
T |
|
| Q |
205 |
gcaatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccga |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1249005 |
gcaatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtggggggatcgtaccga |
1248906 |
T |
|
| Q |
305 |
cgaggtcatcagcaccgtcgatctcgaggaagttgacacggtagattgtggtttttgggattttcttgcataaga |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1248905 |
cgaggtcatcagcaccgtcgatctcgaggaagttgacacggtagattgttgtttttgggattttcttgcataaga |
1248831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 49 - 375
Target Start/End: Original strand, 12079465 - 12079791
Alignment:
| Q |
49 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
148 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||| |
|
|
| T |
12079465 |
ttaggaaggcggccgaggtaagctggaattggaccggttaattggttgttattaagccctaaggtggctaaattggttagtttgctaaagtaatcaggga |
12079564 |
T |
|
| Q |
149 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
248 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||| ||||||||||| ||| | |||||||||||||| |||||||| || |||||||| ||| ||| |
|
|
| T |
12079565 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttaggtaggaggcg |
12079664 |
T |
|
| Q |
249 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtag |
348 |
Q |
| |
|
|| ||||||||||| ||||| ||||| || || |||||||| ||||| |||||||| || ||||||||||| || ||||| |||||||||||||| | | |
|
|
| T |
12079665 |
taaaatgagggtctcgaggtaaggtagatcggcgatgagtggcggtattgtaccgacaagatcatcagcaccatctatctcaaggaagttgacacgatgg |
12079764 |
T |
|
| Q |
349 |
attgtggtttttgggattttcttgcat |
375 |
Q |
| |
|
|| || ||||||||||||||||||||| |
|
|
| T |
12079765 |
atggttgtttttgggattttcttgcat |
12079791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 49 - 375
Target Start/End: Original strand, 12096105 - 12096431
Alignment:
| Q |
49 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
148 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||| |
|
|
| T |
12096105 |
ttaggaaggcggccgaggtaagcaggaattggaccggttaattggttgttattaagccctaaggtggctaaattggtaagtttgctaaagtaatcaggga |
12096204 |
T |
|
| Q |
149 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
248 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||| ||||||||||| ||| | |||||||||||||| |||||||| || |||||||||||| ||| |
|
|
| T |
12096205 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttagggaggaggcg |
12096304 |
T |
|
| Q |
249 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtag |
348 |
Q |
| |
|
|| ||||||||||| ||||| ||||| || || |||||||| || || |||||||| || |||||||| || || ||||| |||||||||||||| | | |
|
|
| T |
12096305 |
aaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcgggattgtaccgacaagatcatcagcgccatctatctcaaggaagttgacacgatgg |
12096404 |
T |
|
| Q |
349 |
attgtggtttttgggattttcttgcat |
375 |
Q |
| |
|
|| || ||||||||||||||||||||| |
|
|
| T |
12096405 |
atggttgtttttgggattttcttgcat |
12096431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University