View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6473_low_8 (Length: 384)
Name: NF6473_low_8
Description: NF6473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6473_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 9 - 368
Target Start/End: Original strand, 950405 - 950764
Alignment:
| Q |
9 |
agcataggcaagtccatttctatgacaaatatctgcatctccaaaagggttgcctgtttgtttacatacagctgggacaataatcaagggcaaatttcct |
108 |
Q |
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| T |
950405 |
agcataagcaagtccatttctatgacaaatatctgcatctccaaaagggttgcctgtttgtttacatacagctgggacaataatcaagggcaaatttcct |
950504 |
T |
|
| Q |
109 |
agatttcctgtagacatcaaatcaaattcatctttaacgttaacttttttattaaaatatgtgataattagatgcgtaaggagatnnnnnnntggacaat |
208 |
Q |
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| T |
950505 |
agatttcctgtagacatcaaatcaaattcatctttaacattaactttttttttaaaatatgtgataattagatgtgtaaggagataaaaaaatggacaac |
950604 |
T |
|
| Q |
209 |
ctggtacactaaagctcccgcatatgcagaatagggaagaaaataatttaaaaaatgtaagtgaatttttctacctgcagcacaacaccccaacacaagg |
308 |
Q |
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| ||| |||||||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
950605 |
ccggtgcactaaagctcctgcatatgcagagtcgggaagaagataatttaaaaaatgtaagtgaatttttctacctgcagcacaacaccccaacacaagg |
950704 |
T |
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| Q |
309 |
ccttgaagatgatgaggaactctcatcaatttaactaccaaccatccaagagctgctcca |
368 |
Q |
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| T |
950705 |
ccttgaagatgatgaggaactctcatcaatttaactaccaaccatccaagagctgctcca |
950764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 1101183 - 1101066
Alignment:
| Q |
251 |
ataatttaaaaaatgtaagtgaatttttctacctgcagcacaacaccccaacacaaggccttgaagatgatgaggaactctcatcaatttaactaccaac |
350 |
Q |
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| T |
1101183 |
ataatttaaaaaatgtaagtgaatttttctacctgcagcacaacaccccaacacaaggccttgaagatgatgaggaactctcatcaatttaactaccaac |
1101084 |
T |
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| Q |
351 |
catccaagagctgctcca |
368 |
Q |
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| T |
1101083 |
catccaagagctgctcca |
1101066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 1101362 - 1101249
Alignment:
| Q |
9 |
agcataggcaagtccatttctatgacaaatatctgcatctccaaaagggttgcctgtttgtttacatacagctgggacaataatcaagggcaaatttcct |
108 |
Q |
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|||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||| |
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| T |
1101362 |
agcataagcaagtctatttctacgacaaatatccgcatctccaaaagggttgcctctttatttacaaacagctggggcaataatcaagggcaaatttcct |
1101263 |
T |
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| Q |
109 |
agatttcctgtaga |
122 |
Q |
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| T |
1101262 |
aaatttcgtgtaga |
1101249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 942596 - 942550
Alignment:
| Q |
282 |
cctgcagcacaacaccccaacacaaggccttgaagatgatgaggaac |
328 |
Q |
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| T |
942596 |
cctgcagcacaacaccccatcacaaggccatgaagatgacgaggaac |
942550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 30826167 - 30826135
Alignment:
| Q |
202 |
ggacaatctggtacactaaagctcccgcatatg |
234 |
Q |
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| T |
30826167 |
ggacaatctggtgcactaaagctcccgcatatg |
30826135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 31525835 - 31525803
Alignment:
| Q |
205 |
caatctggtacactaaagctcccgcatatgcag |
237 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
31525835 |
caatccggtacactaaagctcccgcatatgcag |
31525803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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