View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6474_high_3 (Length: 444)
Name: NF6474_high_3
Description: NF6474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6474_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 21353891 - 21354336
Alignment:
| Q |
1 |
tcatcatcaggcagttttctcttggatattttcagaagcaaagcattggtgggacgacgctccccaaatgcaggatgacagtaagggtcttccgggcgga |
100 |
Q |
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| T |
21353891 |
tcatcatcaggcagttttctcttggatattttcagaagcaaagcattggtgggacgacgctccccaaatgcaggatgacagtaagggtcttccgggcgga |
21353990 |
T |
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| Q |
101 |
atcgaagctctaatttgtttgcttgtgaactgcgagcctacagattatgagcaaggccataattgtaaatgtaattagcatggagnnnnnnnnttgaatc |
200 |
Q |
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| T |
21353991 |
atcgaagctctaatttgtttgcttgtgaactgcgagcctacggattatgagcaaggccataattgtaaatgtaattagcatggagaaaaaaaattgaatc |
21354090 |
T |
|
| Q |
201 |
aaaataatttttaacaaaacttgcaaagtaccttaaggatgccttgacctccacctagcgtgtcaacggcacgagaggttgtagatggataaccaggata |
300 |
Q |
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| T |
21354091 |
aaaataatttttaacaaaacttgcaaagtaccttaaggatgccttgacttccacctagcgtgtcaacggcacgagaggttgtagatggataaccaggata |
21354190 |
T |
|
| Q |
301 |
gtgcaccagaaatccctgaggctccggtagaaccccagagattgtgccatctttgatcactcccattaacttctagccctgccatatatttaagaa---- |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21354191 |
gtgcaccagaaatccctgaggctccggtagaaccccagagattgtgccatctttgatcactcccattaacttctagccctgccatatatttaagaatcat |
21354290 |
T |
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| Q |
397 |
-----tgtcaagtaatat-gtaaaagggagacaagagtgatgatgt |
436 |
Q |
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| T |
21354291 |
ataattgtcaagtaatatcataaaagggagacaagagtaatgatgt |
21354336 |
T |
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