View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6474_high_7 (Length: 215)
Name: NF6474_high_7
Description: NF6474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6474_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 3274017 - 3274201
Alignment:
| Q |
15 |
atgaatatgggagatagttacgtcttggctatccgtcaccgcaatatgtggtcctggtccattgatatgagtgagtccagttatttgaagcccgtcacat |
114 |
Q |
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| T |
3274017 |
atgaatatgggagatagttatgtcttggctatccgtcaccgcaatatgtggtcctggtccattgatatgagtgagtccagttatttgaagcccgtcacat |
3274116 |
T |
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| Q |
115 |
ttatcaaactgcaaagcctgcgtatcaaacattgcaattattgagaaaaatatatttcaattcgtgatttgtttgatgagaattt |
199 |
Q |
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| T |
3274117 |
ttatcaaactgcaaagcctgcgtatcaaacattgcaattattgagaaaaatatatttcaattcgtgatttgtttgatgagaattt |
3274201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 3279233 - 3279353
Alignment:
| Q |
15 |
atgaatatgggagatagttacgtcttggctatccgtcaccgcaatatgtggtcctggtccattgatatgagtgagtccagttatttgaagcccgtcacat |
114 |
Q |
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| T |
3279233 |
atgaatatgtgagatagttatatcttgactatcgatcaccgcgatatgtgctcctggaccattgatatgggtgagtccatttatttgaagtccgtcacat |
3279332 |
T |
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| Q |
115 |
ttatcaaactgcaaagcctgc |
135 |
Q |
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| T |
3279333 |
ttatcgaactgtaaagcctgc |
3279353 |
T |
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