View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6474_low_2 (Length: 508)
Name: NF6474_low_2
Description: NF6474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6474_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 5 - 491
Target Start/End: Complemental strand, 46667036 - 46666541
Alignment:
| Q |
5 |
ggtagattattctaacacctcaatttacgaatgtatcgtagaag---------aagggtgtgtttattttttaagtagtatttgattttattgaattgag |
95 |
Q |
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| T |
46667036 |
ggtagagtatcctaacacctcaatttacgaatgtatcgtagaagttcttaagtaagggtgtgtttattttttaagtagtatttgattttattgaattgag |
46666937 |
T |
|
| Q |
96 |
ttgtgctatcaccaaacatatggttaattgaattgcatcacttaacgataaaatttatctaactattgtcatatttttcaataaattaagggtttgatgg |
195 |
Q |
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| T |
46666936 |
ttgtgctattaccaaacatatggttaattgaattgcatcattttacgataaaatttctctaactattgtcatatttttcaataaattaagggtttgatgg |
46666837 |
T |
|
| Q |
196 |
atcatcataaagaaatagttgaatatttggagcaaaaacgagtttctacaatattcttgttcagaagaaatttactccgtagaatggtatctgtactagc |
295 |
Q |
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| T |
46666836 |
atcatcataaagaaatagttgaatatttggagcaaaaacaagtttctacaatattcttgttcagaagaaatttactccgtagaatggtatctgtactagc |
46666737 |
T |
|
| Q |
296 |
caactcctatgacaaagatgtcaagctattgaatggaacacacaagtctcatgtgcactctacaatggaggtcactgattttttcactctttcttgctat |
395 |
Q |
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| T |
46666736 |
caactcctatgacaaagatgtcaagctattgaatggaacacacaagtctcatgtgcactctacaatggaggtcactgattttttcactctttcttgctat |
46666637 |
T |
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| Q |
396 |
aatcttttttggttttaaatctgatcctgttatgcttctgcaggctacaattcttgcaaagtataagccaaaaatcaatgtcacgttattgatacc |
491 |
Q |
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| T |
46666636 |
aatcttttttggttttaaatctgatcctgttatgcttctgcaggctacaattcttgcaaagtataagccaaaaatcaatgtcacgttattgatacc |
46666541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 371
Target Start/End: Original strand, 6117722 - 6117909
Alignment:
| Q |
184 |
agggtttgatggatcatcataaagaaatagttgaatatttggagcaaaaacgagtttctacaatattcttgttcagaagaaatttactccgtagaatggt |
283 |
Q |
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||||||||||||| |||||||| || ||||| ||||| || | |||| |||||||| |||||||| | || ||||| ||||| || ||||| || |
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| T |
6117722 |
agggtttgatggagcatcataaggagatagtagaatacttccaaagaaaaggagtttctgcaatattccttttaagaaggaatttgctaagtagatcagt |
6117821 |
T |
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| Q |
284 |
atctgtactagccaactcctatgacaaagatgtcaagctattgaatggaacacacaagtctcatgtgcactctacaatggaggtcact |
371 |
Q |
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| T |
6117822 |
atctgtgctagcaaattcctatgacaaacatgccaaacagctcaatggaacccacaaatctcatgtccactccacaatagaggtcact |
6117909 |
T |
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