View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6474_low_4 (Length: 420)
Name: NF6474_low_4
Description: NF6474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6474_low_4 |
 | |
|
| [»] scaffold1393 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 4806718 - 4806315
Alignment:
| Q |
9 |
catcagaggaagtataccgtagagtcaatgaaccaggacttttgaaattcacagatgttggcaaaagagtcagacacccacaatacggtaacgagtacca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4806718 |
catcagaggaagtataccgtagagtcaatgaactaggacttttgaaattcacagatgttggcaaaagagtcagacacccacaatacggtaacgagcacca |
4806619 |
T |
|
| Q |
109 |
ttggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtgac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4806618 |
ttggaccaaaagaagtatcttctgggatctcccttactggaaagataatttactgagacataatcttgatgttatgcacattgaaaagaacttttgtgac |
4806519 |
T |
|
| Q |
209 |
aatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagc |
308 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4806518 |
aatataattcacacagtgatgaatgtctctggtaaaacaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagc |
4806419 |
T |
|
| Q |
309 |
tacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgtcaatggttgaaagaattgat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4806418 |
tacaacttcttcaaaatggaaaatatctaaaacccaaggctgtttatagtcttactgctgatgaagcaaaatctgtttgtcaatggttgaaagagttgag |
4806319 |
T |
|
| Q |
409 |
gatg |
412 |
Q |
| |
|
|||| |
|
|
| T |
4806318 |
gatg |
4806315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 12765335 - 12764932
Alignment:
| Q |
9 |
catcagaggaagtataccgtagagtcaatgaaccaggacttttgaaattcacagatgttggcaaaagagtcagacacccacaatacggtaacgagtacca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12765335 |
catcagaggaagtataccgtagagtcaatgaactaggacttttgaaattcacagatgttggcaaaagagtcagacacccacaatacggtaacgagcacca |
12765236 |
T |
|
| Q |
109 |
ttggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtgac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12765235 |
ttggaccaaaagaagtatcttctgggatctcccttactggaaagataatttactgagacataatcttgatgttatgcacattgaaaagaacttttgtgac |
12765136 |
T |
|
| Q |
209 |
aatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagc |
308 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12765135 |
aatataattcacacagtgatgaatgtctctggtaaaacaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagc |
12765036 |
T |
|
| Q |
309 |
tacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgtcaatggttgaaagaattgat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12765035 |
tacaacttcttcaaaatggaaaatatctaaaacccaaggctgtttatagtcttactgctgatgaagcaaaatctgtttgtcaatggttgaaagagttgag |
12764936 |
T |
|
| Q |
409 |
gatg |
412 |
Q |
| |
|
|||| |
|
|
| T |
12764935 |
gatg |
12764932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 55 - 387
Target Start/End: Original strand, 13566527 - 13566859
Alignment:
| Q |
55 |
attcacagatgttggcaaaagagtcagacacccacaatacggtaacgagtaccattggaccaaaagaagtatcttctgggatctcccttactggaaagat |
154 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||| |||| || | || || |||||| |||||||||||| || ||||| || |||||||||||||| |
|
|
| T |
13566527 |
attcccagatgttggcaaaagaatcagataccatgaatatggggaaaagcacaattggatcaaaagaagtattttttgggaccttccttactggaaagac |
13566626 |
T |
|
| Q |
155 |
aatttattgagacataatcttgatgttatgcacattgaaaataacttttgtgacaatataattcgcacggtgatgaatgtctctggtaaatcaaaagata |
254 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||| || ||| |||||||||| ||| ||| |||||||||||||| |||||| ||||||||| |
|
|
| T |
13566627 |
aatttactaagacataatcttgatgttatgcacattgaaaagaatatttttgacaatatacttcacacagtgatgaatgtctccggtaaaacaaaagata |
13566726 |
T |
|
| Q |
255 |
atgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagctacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaa |
354 |
Q |
| |
|
|||||||||||| | ||| ||| | | ||||||| |||||||||||||| |||||| ||||| ||||||||||| | |||||| || ||| || |
|
|
| T |
13566727 |
atgagaaggctaaactgggtttgtcggtttattgtaaaagaccagaaatggaactacaatctcttccaaatggaaaattttgaaaacccaaagctgtttt |
13566826 |
T |
|
| Q |
355 |
tagtcttattgctgatgaagcaaaatctgtttg |
387 |
Q |
| |
|
|||||| | |||||||||||||||||||||| |
|
|
| T |
13566827 |
tagtctaacctctgatgaagcaaaatctgtttg |
13566859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 330
Target Start/End: Original strand, 2765927 - 2766033
Alignment:
| Q |
224 |
gtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagctacaacttcttcaaa |
323 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||| | || ||||| ||| |||||||| |||||| |||||||||||||| || |
|
|
| T |
2765927 |
gtgatgaatgtctgcggtaaaacaaaagataatgagaaggctagaatgaatttaccattatattataagagactagaaattaagctacaacttctttcaa |
2766026 |
T |
|
| Q |
324 |
atggaaa |
330 |
Q |
| |
|
||||||| |
|
|
| T |
2766027 |
atggaaa |
2766033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 269
Target Start/End: Complemental strand, 7302426 - 7302262
Alignment:
| Q |
105 |
accattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttg |
204 |
Q |
| |
|
|||| ||||| ||||| ||||| || ||||| ||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| || || | | |
|
|
| T |
7302426 |
accactggactaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatgtctt |
7302327 |
T |
|
| Q |
205 |
tgacaatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaa |
269 |
Q |
| |
|
|||||| ||| || ||| |||||| ||||| || ||| ||||||| |||||||||||||||| |
|
|
| T |
7302326 |
tgacaacatatttaacacagtgatggatgtcaaaggcaaaacaaaagacaatgagaaggctagaa |
7302262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 269
Target Start/End: Complemental strand, 18338309 - 18338145
Alignment:
| Q |
105 |
accattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttg |
204 |
Q |
| |
|
|||| ||||| ||||| ||||| || ||||| ||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| || || | | |
|
|
| T |
18338309 |
accactggactaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatgtctt |
18338210 |
T |
|
| Q |
205 |
tgacaatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaa |
269 |
Q |
| |
|
|||||| ||| || ||| |||||| ||||| || ||| ||||||| |||||||||||||||| |
|
|
| T |
18338209 |
tgacaacatatttaacacagtgatggatgtcaaaggcaaaacaaaagacaatgagaaggctagaa |
18338145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 7407550 - 7407147
Alignment:
| Q |
9 |
catcagaggaagtataccgtagagtcaatgaaccaggacttttgaaattcacagatgttggcaaaagagtcagacacccacaatacggtaacgagtacca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7407550 |
catcagaggaagtataccgtagagtcaatgaactaggacttttgaaattcacagatgttggcaaaagagtcagacacccacaatacggtaacgagcacca |
7407451 |
T |
|
| Q |
109 |
ttggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtgac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7407450 |
ttggaccaaaagaagtatcttctgggatctcccttactggaaagataatttactgagacataatcttgatgttatgcacattgaaaagaacttttgtgac |
7407351 |
T |
|
| Q |
209 |
aatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagc |
308 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7407350 |
aatataattcacacagtgatgaatgtctctggtaaaacaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagc |
7407251 |
T |
|
| Q |
309 |
tacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgtcaatggttgaaagaattgat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7407250 |
tacaacttcttcaaaatggaaaatatctaaaacccaaggctgtttatagtcttactgctgatgaagcaaaatctgtttgtcaatggttgaaagagttgag |
7407151 |
T |
|
| Q |
409 |
gatg |
412 |
Q |
| |
|
|||| |
|
|
| T |
7407150 |
gatg |
7407147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 108 - 412
Target Start/End: Original strand, 14899157 - 14899461
Alignment:
| Q |
108 |
attggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtga |
207 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
14899157 |
attggaccaaaagaagtattttttgggatctcccttactggaaagacaatttactaagacataatctggatgttatgcacattgaaaagaatttttgtga |
14899256 |
T |
|
| Q |
208 |
caatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggag |
307 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| | |||||||||||||||| || ||| |
|
|
| T |
14899257 |
caatatagttaacacagtgatgaatgtctctggtaaaacaaaagataacgagaaggctagaatggatttgccagagtattgtaagagaccagatattgag |
14899356 |
T |
|
| Q |
308 |
ctacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgtcaatggttgaaagaattga |
407 |
Q |
| |
|
|| ||||||||| ||||||||||||||| ||||| |||||| || |||| | | || |||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
14899357 |
ttaaaacttcttccaaatggaaaatatctgaaacccaaggctgtttatagcttaaccagtgctgaagcgaaatctgtttgtcagtggttaaaagaattga |
14899456 |
T |
|
| Q |
408 |
tgatg |
412 |
Q |
| |
|
|||| |
|
|
| T |
14899457 |
ggatg |
14899461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 3 - 414
Target Start/End: Original strand, 22329740 - 22330151
Alignment:
| Q |
3 |
ggacatcatcagaggaagtataccgtagagtcaatgaaccaggacttttgaaattcacagatgttggcaaaagagtcagacacccacaatacggtaacga |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
22329740 |
ggacatcatcagaggaagtataccgtagagtcaatgaactaggacttttgaaattcacaaatgttggcaaaagagtcagacacctacaatacggtaatga |
22329839 |
T |
|
| Q |
103 |
gtaccattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttt |
202 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22329840 |
gcaccattggaccaaaagaagtattttctgggatctcccttactagaaagataatttattgagacataatcttgatgttatgcacattgaaaagaacttt |
22329939 |
T |
|
| Q |
203 |
tgtgacaatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaa |
302 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
22329940 |
tgtgacaatataattcacacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgtcattgcaatgtaagagaccagaaa |
22330039 |
T |
|
| Q |
303 |
tggagctacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgtcaatggttgaaaga |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22330040 |
tggagctacaacttcttcaaaatggaaaatatctaaaacccaaggctatttatagtcttactgctgatgaagcaaaatctgtttgtcaatggttgaaaga |
22330139 |
T |
|
| Q |
403 |
attgatgatgtc |
414 |
Q |
| |
|
||||| |||||| |
|
|
| T |
22330140 |
attgaggatgtc |
22330151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 54954063 - 54953877
Alignment:
| Q |
3 |
ggacatcatcagaggaagtataccgtagagtcaatgaaccaggacttttgaaattcacagatgttggcaaaagagtcagacacccacaatacggtaacga |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54954063 |
ggacattatcagaggaagtataccgtagagtcaatgaactaggacttttgaagttcacagatgttggcaaaagagtcagacacccacaatacggtaacga |
54953964 |
T |
|
| Q |
103 |
gtaccattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacat |
189 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54953963 |
gcaccattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacat |
54953877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 108 - 412
Target Start/End: Original strand, 14808286 - 14808590
Alignment:
| Q |
108 |
attggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtga |
207 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
14808286 |
attggaccaaaagaagtattttttgggatctcccttactggaaagacaatttactaagacataatctggatgttatgcacattgaaaagaatttttgtga |
14808385 |
T |
|
| Q |
208 |
caatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggag |
307 |
Q |
| |
|
||||||| || ||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||||| | |||||||||||||||| |||||| |
|
|
| T |
14808386 |
caatatagttaacacagtgatgaatgtctctagtaaaacaaaagataacgagaaggctagaatggatttgccagagtattgtaagagaccagatatggag |
14808485 |
T |
|
| Q |
308 |
ctacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgtcaatggttgaaagaattga |
407 |
Q |
| |
|
|| ||||||||| ||||||||||||| | ||||| |||||| || ||||| | | || |||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
14808486 |
ttaaaacttcttccaaatggaaaatatttgaaacccaaggctgtttatagtttaaccagtgctgaagcgaaatctgtttgtcagtggttaaaagaattga |
14808585 |
T |
|
| Q |
408 |
tgatg |
412 |
Q |
| |
|
|||| |
|
|
| T |
14808586 |
ggatg |
14808590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 269
Target Start/End: Complemental strand, 38969723 - 38969559
Alignment:
| Q |
105 |
accattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttg |
204 |
Q |
| |
|
|||| ||||| ||||| ||||| || ||||| ||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| || || | | |
|
|
| T |
38969723 |
accactggactaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatgtctt |
38969624 |
T |
|
| Q |
205 |
tgacaatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaa |
269 |
Q |
| |
|
|||||| ||| || ||| |||||| ||||| || ||| ||||||| |||||||||||||||| |
|
|
| T |
38969623 |
tgacaacatatttaacacagtgatggatgtcaaaggcaaaacaaaagacaatgagaaggctagaa |
38969559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 10799995 - 10799907
Alignment:
| Q |
122 |
agtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtgacaa |
210 |
Q |
| |
|
||||| || ||||| ||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| || || |||| |||||| |
|
|
| T |
10799995 |
agtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatttttttgacaa |
10799907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 1935238 - 1935132
Alignment:
| Q |
108 |
attggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtga |
207 |
Q |
| |
|
||||||| ||||||||||| || |||||| | | || |||||||||||| |||| || || ||||| ||||| ||||| ||||| || || |||| ||| |
|
|
| T |
1935238 |
attggacaaaaagaagtattttttgggatttgctatattggaaagataatctattaaggcacaatctcgatgtcatgcatattgagaagaatttttttga |
1935139 |
T |
|
| Q |
208 |
caatata |
214 |
Q |
| |
|
||||||| |
|
|
| T |
1935138 |
caatata |
1935132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1393 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: scaffold1393
Description:
Target: scaffold1393; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 3 - 386
Target Start/End: Original strand, 151 - 534
Alignment:
| Q |
3 |
ggacatcatcagaggaagtataccgtagagtcaatgaaccaggacttttgaaattcacagatgttggcaaaagagtcagacacccacaatacggtaacga |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
151 |
ggacaacatcagaggaagtataccgtagagtcaatgaactaggacttttgaaattcacagatgttggcaaaagagtcagacacccacaatacggtaacga |
250 |
T |
|
| Q |
103 |
gtaccattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttt |
202 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
251 |
gcaccattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttactgagacataatcttgatgttatgcacattgaaaagaacttt |
350 |
T |
|
| Q |
203 |
tgtgacaatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaa |
302 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
351 |
tgtgacaatataattcacacagtgatgaatgtctctggtaaaacaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaa |
450 |
T |
|
| Q |
303 |
tggagctacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgttt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
451 |
tggagctacaacttcttcaaaatggaaaatatctaaaacccaaggctatttatagtcttactgctgatgaagcaaaatctgttt |
534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Original strand, 23010434 - 23010837
Alignment:
| Q |
9 |
catcagaggaagtataccgtagagtcaatgaaccaggacttttgaaattcacagatgttggcaaaagagtcagacacccacaatacggtaacgagtacca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
23010434 |
catcagaggaagtataccgtagagtcaatgaactaggacttttgaaattcacagatgttggcaaaagagtcagacacccaaaatacggtaacgagcacca |
23010533 |
T |
|
| Q |
109 |
ttggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtgac |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
23010534 |
ttggaccaaaaggagtatcttctgggatctcccttactggaaagataatttactgagacataattttgatgttatgcacattgaaaagaacttttgtgac |
23010633 |
T |
|
| Q |
209 |
aatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagc |
308 |
Q |
| |
|
|||||||||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23010634 |
aatataattcacatagtgatgaatgtctctgctaaaacaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccataaatggagc |
23010733 |
T |
|
| Q |
309 |
tacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgtcaatggttgaaagaattgat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||| || ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23010734 |
tacaacttcttcaaaatggaaaatatctaaaatccaaggctgtttatagtcttactgatgatgaagcaaaatctgtttgtcaatggttgaaagaattgag |
23010833 |
T |
|
| Q |
409 |
gatg |
412 |
Q |
| |
|
|||| |
|
|
| T |
23010834 |
gatg |
23010837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 108 - 388
Target Start/End: Original strand, 20149119 - 20149399
Alignment:
| Q |
108 |
attggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtga |
207 |
Q |
| |
|
|||||| |||||||||||| || ||||| || ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| || |||| ||| |
|
|
| T |
20149119 |
attggatcaaaagaagtattttttgggaccttccttattggaaagacaatttactgagacataatcttgatgttatgcacattgaaaagaatttttttga |
20149218 |
T |
|
| Q |
208 |
caatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggag |
307 |
Q |
| |
|
||||||| ||| ||| |||||||||||||| |||||| ||||||||||||||||||||||| |||| ||| | || |||||||||||| ||||||||| |
|
|
| T |
20149219 |
caatatacttcacacagtgatgaatgtctcaggtaaaacaaaagataatgagaaggctagactggatttgtcggtgtattgtaagagactagaaatggaa |
20149318 |
T |
|
| Q |
308 |
ctacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgt |
388 |
Q |
| |
|
||||| | ||||| ||||||||||| || |||||| ||||||||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
20149319 |
ctacagcctcttccaaatggaaaatttcgaaaacccaaggctatttttagtctaacctctgatgaagcaaaatctgtttgt |
20149399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 269
Target Start/End: Complemental strand, 33905365 - 33905201
Alignment:
| Q |
105 |
accattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttg |
204 |
Q |
| |
|
|||| ||||| ||||| ||||| || ||||| ||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| || || | | |
|
|
| T |
33905365 |
accactggactaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatgtctt |
33905266 |
T |
|
| Q |
205 |
tgacaatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaa |
269 |
Q |
| |
|
|||||| ||| || ||| |||||| ||||| || ||| ||||||| |||||||||||||||| |
|
|
| T |
33905265 |
tgacaacatatttaacacagtgatggatgtcaaaggcaaaacaaaagacaatgagaaggctagaa |
33905201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 155 - 337
Target Start/End: Complemental strand, 28498239 - 28498057
Alignment:
| Q |
155 |
aatttattgagacataatcttgatgttatgcacattgaaaataacttttgtgacaatataattcgcacggtgatgaatgtctctggtaaatcaaaagata |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28498239 |
aatttattgagacataatcttgatgttatgcacattgaaaagaacttttgtgacaatataattcacacggtgatgaatgtctctggtaaatcaaaagata |
28498140 |
T |
|
| Q |
255 |
atgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagctacaacttcttcaaaatggaaaatatcta |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28498139 |
atgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagctacaatttcttcaaaatggaaaatatcta |
28498057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 110 - 388
Target Start/End: Original strand, 14322553 - 14322831
Alignment:
| Q |
110 |
tggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtgaca |
209 |
Q |
| |
|
|||| |||||||||||| |||||||| || ||||||| |||||| |||||| | |||||||||||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
14322553 |
tggatcaaaagaagtattttctgggaccttccttacttgaaagacaatttactaagacataatcttgatgttatgcacattgaaaagaatttttttgaca |
14322652 |
T |
|
| Q |
210 |
atataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagct |
309 |
Q |
| |
|
||||| ||| ||| |||||||||||||| |||||| ||||||||||||||||||||||| |||| ||| | | ||||||| |||||||||||||| || |
|
|
| T |
14322653 |
atatacttcacacagtgatgaatgtctccggtaaaacaaaagataatgagaaggctagactggatttgtcggtttattgtaaaagaccagaaatggaact |
14322752 |
T |
|
| Q |
310 |
acaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgt |
388 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||| || ||| || |||||| | || |||||||||||||||||||| |
|
|
| T |
14322753 |
acaacctcttccaaatggaaaatttcgaaaacccaaagctgtttttagtctaacctctaatgaagcaaaatctgtttgt |
14322831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 28955118 - 28955223
Alignment:
| Q |
105 |
accattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttg |
204 |
Q |
| |
|
|||| ||||| |||| |||||| || ||||| ||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| || || |||| |
|
|
| T |
28955118 |
accactggacaaaaaaaagtatattttgggacctcccctattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatttttt |
28955217 |
T |
|
| Q |
205 |
tgacaa |
210 |
Q |
| |
|
|||||| |
|
|
| T |
28955218 |
tgacaa |
28955223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 108 - 412
Target Start/End: Complemental strand, 31441 - 31137
Alignment:
| Q |
108 |
attggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtga |
207 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
31441 |
attggaccaaaagaagtattttttgggatctcccttactggaaagacaatttactaagacataatctggatgttatgcacattgaaaagaatttttgtga |
31342 |
T |
|
| Q |
208 |
caatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggag |
307 |
Q |
| |
|
||||||| || ||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||||| | |||||||||||||||| |||||| |
|
|
| T |
31341 |
caatatagttaacacagtgatgaatgtctctagtaaaacaaaagataacgagaaggctagaatggatttgccagagtattgtaagagaccagatatggag |
31242 |
T |
|
| Q |
308 |
ctacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgtcaatggttgaaagaattga |
407 |
Q |
| |
|
|| ||||||||| ||||||||||||| | ||||| |||||| || ||||| | | || |||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
31241 |
ttaaaacttcttccaaatggaaaatatttgaaacccaaggctgtttatagtttaaccagtgctgaagcgaaatctgtttgtcagtggttaaaagaattga |
31142 |
T |
|
| Q |
408 |
tgatg |
412 |
Q |
| |
|
|||| |
|
|
| T |
31141 |
ggatg |
31137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 108 - 412
Target Start/End: Complemental strand, 358757 - 358453
Alignment:
| Q |
108 |
attggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtga |
207 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||| |||||| | ||||||||| | |||||||||||||||||||| || |||||||| |
|
|
| T |
358757 |
attggaccaaaagaagtattttttgggatctcccttactggaaagacaatttactaagacataatatggatgttatgcacattgaaaagaatttttgtga |
358658 |
T |
|
| Q |
208 |
caatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggag |
307 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||||| |||||||||| ||||| ||||||||||| |||||| | |||||||||||||||| |||||| |
|
|
| T |
358657 |
caatatagttaacacagtgatgaatgtctctggtaaaacaaaagataacgagaaagctagaatggatttgccagagtattgtaagagaccagatatggag |
358558 |
T |
|
| Q |
308 |
ctacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgtcaatggttgaaagaattga |
407 |
Q |
| |
|
|| ||||||||| ||||||||||||||| ||||| |||| | || ||||| | | || |||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
358557 |
ttaaaacttcttccaaatggaaaatatctgaaacccaaggttgtttatagtttaaccagtgctgaagcgaaatctgtttgtcagtggttaaaagaattga |
358458 |
T |
|
| Q |
408 |
tgatg |
412 |
Q |
| |
|
|||| |
|
|
| T |
358457 |
ggatg |
358453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 108 - 412
Target Start/End: Original strand, 21596873 - 21597176
Alignment:
| Q |
108 |
attggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtga |
207 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||| ||||||||| |||||| | ||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
21596873 |
attggaccaaaagaagtatttttttggatctccctt-ctggaaagacaatttactaagacataatctggatgttatgcacattgaaaagaatttttgtga |
21596971 |
T |
|
| Q |
208 |
caatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggag |
307 |
Q |
| |
|
||||||| || ||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||||| | |||||||||||||||| |||||| |
|
|
| T |
21596972 |
caatatagttaacacagtgatgaatgtctctagtaaaacaaaagataacgagaaggctagaatggatttgccagagtattgtaagagaccagatatggag |
21597071 |
T |
|
| Q |
308 |
ctacaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttgtcaatggttgaaagaattga |
407 |
Q |
| |
|
| ||||||||| ||||||||||||||| ||||| |||||| || ||||| | | || |||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
21597072 |
tcaaaacttcttccaaatggaaaatatctgaaacccaaggctgtttatagtttaaccagtgctgaagcgaaatctgtttgtcagtggttaaaagaattga |
21597171 |
T |
|
| Q |
408 |
tgatg |
412 |
Q |
| |
|
|||| |
|
|
| T |
21597172 |
ggatg |
21597176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 269
Target Start/End: Complemental strand, 4965522 - 4965358
Alignment:
| Q |
105 |
accattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttg |
204 |
Q |
| |
|
|||| ||||| ||||| ||||| || ||||| ||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| || || | | |
|
|
| T |
4965522 |
accactggactaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatgtctt |
4965423 |
T |
|
| Q |
205 |
tgacaatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaa |
269 |
Q |
| |
|
|||||| ||| || ||| |||||| ||||| || ||| ||||||| |||||||||||||||| |
|
|
| T |
4965422 |
tgacaacatatttaacacagtgatggatgtcaaaggcaaaacaaaagacaatgagaaggctagaa |
4965358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 269
Target Start/End: Original strand, 35596803 - 35596967
Alignment:
| Q |
105 |
accattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttg |
204 |
Q |
| |
|
|||| ||||| ||||| ||||| || ||||| ||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| || || | | |
|
|
| T |
35596803 |
accactggactaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatgtctt |
35596902 |
T |
|
| Q |
205 |
tgacaatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaa |
269 |
Q |
| |
|
|||||| ||| || ||| |||||| ||||| || ||| ||||||| |||||||||||||||| |
|
|
| T |
35596903 |
tgacaacatatttaacacagtgatggatgtcaaaggcaaaacaaaagacaatgagaaggctagaa |
35596967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 300
Target Start/End: Complemental strand, 19594253 - 19594117
Alignment:
| Q |
161 |
ttgagacataatcttgatgttatgcacattgaaaataacttttgtgacaatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgaga |
260 |
Q |
| |
|
||||||||| || ||||| |||||||| || |||||| || |||||||||||| ||| | | ||||||||||| |||||| |||| ||||||||| |
|
|
| T |
19594253 |
ttgagacatgattttgatcttatgcacgttaaaaatactttatgtgacaatatacttcata--gcgatgaatgtcttaggtaaa-caaagtataatgaga |
19594157 |
T |
|
| Q |
261 |
aggctagaatggacttgccattgcattgtaagagaccaga |
300 |
Q |
| |
|
|||||| || ||| |||||||| |||||||||||||||| |
|
|
| T |
19594156 |
aggctatgattgacatgccattgaattgtaagagaccaga |
19594117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 269
Target Start/End: Complemental strand, 37367837 - 37367684
Alignment:
| Q |
116 |
aaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtgacaatataa |
215 |
Q |
| |
|
||||| ||||| || ||||| ||| | || ||||||||||| || | ||||||||||||||||| ||||||||||| || || | | |||||| ||| |
|
|
| T |
37367837 |
aaaaggagtatattttgggacctctcatattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatgtctttgacaacatat |
37367738 |
T |
|
| Q |
216 |
ttcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaa |
269 |
Q |
| |
|
|| ||| |||||| ||||| || ||| ||||||| |||||||||||||||| |
|
|
| T |
37367737 |
ttaacacagtgatggatgtcaaaggcaaaacaaaagacaatgagaaggctagaa |
37367684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 108 - 348
Target Start/End: Complemental strand, 2064267 - 2064028
Alignment:
| Q |
108 |
attggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtga |
207 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
2064267 |
attggaccaaaagaagtatttt-tgggacctcccttactggaaagacaatttactaagacataatcttgatgttatgcacattgaaaagaatttttgtga |
2064169 |
T |
|
| Q |
208 |
caatataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggag |
307 |
Q |
| |
|
||||||| ||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |||||||||||| || ||| || |
|
|
| T |
2064168 |
caatatagttcacacaatgatgaatgtctctggtaaaacaaaagataatgagaaggctggaatggatttgccattatattgtaagagactggatatgaag |
2064069 |
T |
|
| Q |
308 |
ctacaacttcttcaaaatggaaaatatctaaaaccaaaggc |
348 |
Q |
| |
|
|| ||||||||| ||||| ||| ||||| |||| |||||| |
|
|
| T |
2064068 |
ttaaaacttcttccaaatgaaaagtatctgaaacaaaaggc |
2064028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 269
Target Start/End: Complemental strand, 37571186 - 37571027
Alignment:
| Q |
110 |
tggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtgaca |
209 |
Q |
| |
|
||||| ||||| ||||| || ||||| ||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| || || | | ||||| |
|
|
| T |
37571186 |
tggactaaaaggagtatattttgggacctcccatattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatgtctttgaca |
37571087 |
T |
|
| Q |
210 |
atataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaa |
269 |
Q |
| |
|
| ||| || ||| |||||| ||||| || ||| ||||||| | |||||||||||||| |
|
|
| T |
37571086 |
acatatttaacacagtgatggatgtcaaaggaaaaacaaaagacactgagaaggctagaa |
37571027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 22123743 - 22123638
Alignment:
| Q |
105 |
accattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttg |
204 |
Q |
| |
|
|||| ||||| |||| |||||| || ||| | ||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| || || |||| |
|
|
| T |
22123743 |
accactggacaaaaaaaagtatattttggaacctcccctattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatttttt |
22123644 |
T |
|
| Q |
205 |
tgacaa |
210 |
Q |
| |
|
|||||| |
|
|
| T |
22123643 |
tgacaa |
22123638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 110 - 387
Target Start/End: Original strand, 23959171 - 23959447
Alignment:
| Q |
110 |
tggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttgtgaca |
209 |
Q |
| |
|
|||| |||||||||||| |||||||| || ||||||| |||||| |||||| | |||||||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
23959171 |
tggatcaaaagaagtattttctgggaccttccttacttgaaagacaatttactaagacataatcttgatgttatgcacattgaaaagaatatttttgaca |
23959270 |
T |
|
| Q |
210 |
atataattcgcacggtgatgaatgtctctggtaaatcaaaagataatgagaaggctagaatggacttgccattgcattgtaagagaccagaaatggagct |
309 |
Q |
| |
|
||||| ||| ||| |||||||||||||| |||||| ||||||||||||||||||||||| |||| ||| | | ||||||| |||||||||||||| || |
|
|
| T |
23959271 |
atatacttcacacagtgatgaatgtctccggtaaaacaaaagataatgagaaggctagactggatttgtcggtttattgtaaaagaccagaaatggaact |
23959370 |
T |
|
| Q |
310 |
acaacttcttcaaaatggaaaatatctaaaaccaaaggctattaatagtcttattgctgatgaagcaaaatctgtttg |
387 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||| || ||| || |||||| | |||||||||||||||||||||| |
|
|
| T |
23959371 |
acaacctcttccaaatggaaaatttcgaaaacccaaagctgtt-ttagtctaacctctgatgaagcaaaatctgtttg |
23959447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 57861 - 57756
Alignment:
| Q |
105 |
accattggaccaaaagaagtatcttctgggatctcccttactggaaagataatttattgagacataatcttgatgttatgcacattgaaaataacttttg |
204 |
Q |
| |
|
|||| ||||| |||| ||||| || ||||| ||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| || || |||| |
|
|
| T |
57861 |
accactggacaaaaaagagtatattttgggacctcccctattggaaagataacttgctcagacataatcttgatgtaatgcacattgagaagaatttttt |
57762 |
T |
|
| Q |
205 |
tgacaa |
210 |
Q |
| |
|
|||||| |
|
|
| T |
57761 |
tgacaa |
57756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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