View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6474_low_5 (Length: 409)
Name: NF6474_low_5
Description: NF6474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6474_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 8323999 - 8324392
Alignment:
| Q |
16 |
ataacgctaatgtgggtttgggtggcgtgcaagagggggcaactttcgcgttattggatgtccaaaaagaaaaagttgttagttagttttttaatttcat |
115 |
Q |
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| T |
8323999 |
ataacgctaatgtgggtttgggtggcgtgcaagagggggcaacttttgcgttattggatgtccaaaaagaaaaagttgttagttagttttttaatttcat |
8324098 |
T |
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| Q |
116 |
ccaaaccaaaatatcatttccaatctaaaccaataaaaccaaccaacccaagcattcaattcaacacatcatcatcttgaagtactttcatctccgatag |
215 |
Q |
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| T |
8324099 |
ccaaaccaaaatatcatttccaatctaaaccaataaaaccaaccaacccaagcattcaattcaacacatcatcatcttgaagtactttcatctccgatag |
8324198 |
T |
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| Q |
216 |
taacggaattccaacccagaaatctctaaaataccctccaacttccccgactacgttgcagaaacccagacgccgttgcgaaggcacagccatgggcgct |
315 |
Q |
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| T |
8324199 |
taacggaattccaacccagaaatctctaaaataccctccaacttccccgactatgttgcagagacccagacgccgttgcgaaggcacagccatgggcgct |
8324298 |
T |
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| Q |
316 |
atcgttcttgatcttcgtcccggtctcggaatcggtcctttctcccttggtaattttctcttcatttcactaattcgattattatattcatcgc |
409 |
Q |
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| T |
8324299 |
atcgttcttgatcttcgtcccggtctcggaatcggtcctttctccctcggtaattttctcttcatttcaccaattcgattattatattcatcgc |
8324392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 33626171 - 33626222
Alignment:
| Q |
74 |
tgtccaaaaagaaaaagttgttagttagttttttaatttcatccaaaccaaa |
125 |
Q |
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| T |
33626171 |
tgtccaaaaagaaaaacttgtttgttagtttttccatttcatccaaaccaaa |
33626222 |
T |
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