View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6474_low_8 (Length: 328)
Name: NF6474_low_8
Description: NF6474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6474_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 12957814 - 12958117
Alignment:
| Q |
20 |
taattttggttatttgttttaaactatagacatctttaccatgcggagtataaatgccatggacctggagccatagcagagaaaagagcttcttggtcaa |
119 |
Q |
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| T |
12957814 |
taattttggttatttgttttaaactatagacatctttaccatgcggagtataaatgccatggacctggagccatagcagagaaaagagcttcttggtcaa |
12957913 |
T |
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| Q |
120 |
ggcaacttagtgatgaagaagctgctccatttatatctattgattacattgatggcaagaattggttaccagcatggctataatcatatcatcttctgca |
219 |
Q |
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| T |
12957914 |
ggcaacttagtgatgaagaagctgctccatttatatctattgattacattgatggcaagaattggttaccagcatggctataatcatatcatcttctgca |
12958013 |
T |
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| Q |
220 |
caaactcgatctcatatggaatatgatcaagagttgatcttattataaacacacattgttatggcactattttcactttat-atatatacagtagaatta |
318 |
Q |
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| T |
12958014 |
caaactcggtctcatatggaatatgatcaagagttgatcttattataaacacacattgttatggcactattttcactttataatatatacagtagattta |
12958113 |
T |
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| Q |
319 |
tcta |
322 |
Q |
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|||| |
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| T |
12958114 |
tcta |
12958117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 14241188 - 14240953
Alignment:
| Q |
20 |
taattttggttatttgttttaaactatagacatctttaccatgcggagtataaatgccatggacctggagccatagcagagaaaagagcttcttggtcaa |
119 |
Q |
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|||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||||||||||| | || || ||||||||||||||||| |
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| T |
14241188 |
taattttggttatttgttatgaattatagacatctttaccatgcggagtataaatgtcatggacctggagccacaacacagggaagagcttcttggtcaa |
14241089 |
T |
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| Q |
120 |
ggcaacttagtgatgaagaagctgctccatttatatctattgattacattgatggcaagaattggttaccagcatggctataatcatatcat-----ctt |
214 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |
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| T |
14241088 |
ggcagcttagtgatgaagaagctgctccatttatatctattgattacattgatggcaagaattggttaccagcttggatataatcatatcatgcatgttt |
14240989 |
T |
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| Q |
215 |
ctgcacaaactcgatctcatatggaatatgatcaagagt |
253 |
Q |
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|||| |||||||||| |||||||||||||||||||| |
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| T |
14240988 |
gtgcataaactcgatc---tatggaatatgatcaagagt |
14240953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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