View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6475_high_4 (Length: 341)
Name: NF6475_high_4
Description: NF6475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6475_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 17751480 - 17751769
Alignment:
| Q |
1 |
tgccgtggaaatcggcgaattctttgagatatatgtaaccatcaccgttctgatcaatatgtttcatcatacttttcacttcatcagacgtcgttttgga |
100 |
Q |
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| T |
17751480 |
tgccgtggaaatcggcgaattctttgagatatatgtaaccatcaccgttctgatcaatatgtttcatcatacttttcacttcatcagacgtcgttttgga |
17751579 |
T |
|
| Q |
101 |
tccaaaagtcgaaaacatttgtcccaactctgagacagagatccttccatcaccattcttgtcgaacttgttgaagatgttgcgaacctcgtcatccatg |
200 |
Q |
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| T |
17751580 |
tccaaaagtcgaaaacatttgttccaactctgagacagagatccttccatcaccattcttgtcgaacttgctgaagattttgcgaacctcgtcatccatg |
17751679 |
T |
|
| Q |
201 |
gcgtagttgcttttttcagagagccgagggaggaaaagaaagttttgcaacactacacgacacaacacgctaattagggtttggaatttt |
290 |
Q |
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| T |
17751680 |
gcgtagttgcttttttcagagagccgggggaggaaaagaaagttttgcaacactacacgacacaacacgctaattagggtttggaatttt |
17751769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 5 - 290
Target Start/End: Complemental strand, 17711387 - 17711107
Alignment:
| Q |
5 |
gtggaaatcggcgaattctttgagatatatgtaaccatcaccgttctgatcaatatgtttcatcatacttttcacttcatcagacgtcgttttggatcca |
104 |
Q |
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||||||||| |||||||||||||||| ||||||||| || ||||||| ||||||||||| |||||| |||||| |||||||| ||| |||||||||| |
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| T |
17711387 |
gtggaaatcagcgaattctttgagatctatgtaaccgtcgccgttcttatcaatatgttccatcatcgttttcaattcatcagttgtccatttggatcca |
17711288 |
T |
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| Q |
105 |
aaagtcgaaaacatttgtcccaactctgagacagagatccttccatcaccattcttgtcgaacttgttgaagatgttgcgaacctcgtcatccatggcgt |
204 |
Q |
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| T |
17711287 |
aggctcgaaagcatttgttccaactctgtgacagagatccttccgtcaccattcttgtcgaacttgttgaagattttgcgaacctcgtcgtccatggtgt |
17711188 |
T |
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| Q |
205 |
agttgcttttttcagagagccgagggaggaaaagaaagttttgcaacactacacgacacaacacgctaattagggtttggaatttt |
290 |
Q |
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|||||||||| |||| |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
17711187 |
agttgcttttaccagaaagccgaggagggaaaagaaagttttgcaacactacacg-----acacgctgattagggtttggaatttt |
17711107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 17713433 - 17713230
Alignment:
| Q |
5 |
gtggaaatcggcgaattctttgagatatatgtaaccatcaccgttctgatcaatatgtttcatca-tacttttcacttcatcagacgtcgttttggatcc |
103 |
Q |
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||||||||| || ||||||||||||| |||||||| ||||| |||||||||||||||| ||||| || ||| ||||||||||| |||| ||||||||| |
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| T |
17713433 |
gtggaaatccgcaaattctttgagatcaatgtaaccgtcaccattctgatcaatatgttccatcagtagcttt-acttcatcagaggtcgatttggatcc |
17713335 |
T |
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| Q |
104 |
aaaagtcgaaaacatttgtcccaactctgagacagagatccttccatcaccattcttgtcgaacttgttgaagatgttgcgaacctcgtcatccatggcg |
203 |
Q |
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|| ||||||| ||||||| ||| || |||||||||||| ||| |||||| |||||||| ||||||||||||||| |||| |||||||| ||||||||| |
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| T |
17713334 |
aatcgtcgaaagcatttgttccagttccgagacagagatctttcaatcaccgttcttgtcaaacttgttgaagatgctgcgcacctcgtcgtccatggcg |
17713235 |
T |
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| Q |
204 |
tagtt |
208 |
Q |
| |
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||||| |
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| T |
17713234 |
tagtt |
17713230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 1892693 - 1892886
Alignment:
| Q |
17 |
gaattctttgagatatatgtaaccatcaccgttctgatcaatatgtttcatcatacttttcacttcatcagacgtcgttttggatccaaaagtcgaaaac |
116 |
Q |
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|||||||||||||| ||||||| || |||||||||||||| |||| |||||| | ||| ||||||| ||| |||||||||||||||| || |||| | |
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| T |
1892693 |
gaattctttgagatcaatgtaactgtcgccgttctgatcaatttgttccatcatgcgttttacttcattagatgtcgttttggatccaagcgttgaaagc |
1892792 |
T |
|
| Q |
117 |
atttgtcccaactctgagacagagatccttccatcaccattcttgtcgaacttgttgaagatgttgcgaacctcgtcatccatggcgtagttgc |
210 |
Q |
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| T |
1892793 |
atttcttccagctctgagacagagatctttccgtcgtcgttcttgtcgaacttgttgaagatgttacgcacctagtcgttcttggcgtaattgc |
1892886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 1893149 - 1892973
Alignment:
| Q |
5 |
gtggaaatcggcgaattctttgagatatatgtaaccatcaccgttctgatcaatatgtttcatcatacttttcacttcatcagacgtcgttttggatcca |
104 |
Q |
| |
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||||||||||| |||||||||||||| |||||||| || |||||||||||||| |||| |||||| | ||| |||||| |||| ||| ||||||||||| |
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| T |
1893149 |
gtggaaatcggtgaattctttgagatcaatgtaaccgtcgccgttctgatcaatttgttccatcatgcgttttacttcaccagatgtcattttggatcca |
1893050 |
T |
|
| Q |
105 |
aaagtcgaaaacatttgtcccaactctgagacagagatccttccatcaccattcttgtcgaacttgttgaagatgtt |
181 |
Q |
| |
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| |||| ||||| | ||| |||||||||||||||| ||| || | |||||||| ||| ||||||||||||| |
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| T |
1893049 |
tgcattgaaagcatttcttccagctctgagacagagatctttctgtcgtcgttcttgtccaacatgttgaagatgtt |
1892973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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