View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6475_high_6 (Length: 239)
Name: NF6475_high_6
Description: NF6475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6475_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 51845742 - 51845511
Alignment:
| Q |
1 |
tctctgcttactttattcatctccctcatcctcttcacaaccacagataaaccattagtcatggctgctttataagcagaacctaatccaccatttccca |
100 |
Q |
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| T |
51845742 |
tctctgcttactttattcatctccctcatcctcttcacaaccacagataaaccattagtcatggctgctttataagcagaacctaatccaccatttccca |
51845643 |
T |
|
| Q |
101 |
aaacctcagcagcagctttcatcaaatcaggtaaaccaaacacacctttttcatcattcaccattacaagatcacccattccaccactcttcgaagaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51845642 |
aaacctcagcagcagctttcatcaaatcaggtagaccaaacacacctttttcatcattcaccattacaagatcacccattccaccactcttcgaagaacc |
51845543 |
T |
|
| Q |
201 |
tctcctagaatccttctttccactactctctg |
232 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
51845542 |
tctcctagaatccttctttccactactttctg |
51845511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 18628395 - 18628566
Alignment:
| Q |
12 |
tttattcatctccctcatcctcttcacaaccacagataaaccattagtcatggctgctttataagcagaacctaatccaccatttcccaaaacctcagca |
111 |
Q |
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| T |
18628395 |
tttattcatctccctcattctcttcaccaccacactcaatccggtcgccatcgcggccttataagccgatcccaatccaccgttccccaaaacctctgcc |
18628494 |
T |
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| Q |
112 |
gcagctttcatcaaatcaggtaaaccaaacacacctttttcatcattcaccattacaagatcacccattcca |
183 |
Q |
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| T |
18628495 |
gcagctttcatcaaatcttgtaaaccaaatgaacccttctcatcattcaccatcacaatatcacctattcca |
18628566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 7665932 - 7666074
Alignment:
| Q |
34 |
ttcacaaccacagataaaccattagtcatggctgctttataagcagaacctaatccaccatttcccaaaacctcagcagcagctttcatcaaatcaggta |
133 |
Q |
| |
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||||||||||||| | |||||||| ||| | |||||||||| || || || || |||||||| | ||| ||||||| |||||||||||||||||||| |
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| T |
7665932 |
ttcacaaccacagcaacaccattagccatcacagctttataagatgatccaaaccctccatttccaagaacttcagcagaagctttcatcaaatcaggta |
7666031 |
T |
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| Q |
134 |
aaccaaacacacctttttcatcattcaccattacaagatcacc |
176 |
Q |
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| T |
7666032 |
aaccaaacacacccttctcattattcatcatcacaagctcacc |
7666074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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